Odoribacter splanchnicus DSM 20712
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PROVIDER: PRJNA197119 | ENA |
REPOSITORIES: ENA
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Project description:Odoribacter splanchnicus DSM 20712 genome sequencing project
| PRJNA43469 | ENA
Project description:Odoribacter splanchnicus (Werner et al. 1975) Hardham et al. 2008 is the type species of the genus Odoribacter, which belongs to the family Porphyromonadaceae in the order 'Bacteroidales'. The species is of interest because members of the Odoribacter form an isolated cluster within the Porphyromonadaceae. This is the first completed genome sequence of a member of the genus Odoribacter and the fourth sequence from the family Porphyromonadaceae. The 4,392,288 bp long genome with its 3,672 protein-coding and 74 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
| S-EPMC3111987 | biostudies-literature
Project description:BackgroundOdoribacter splanchnicus is an extremely rare pathogen of human infection. This case reports bacteremia infection of O. splanchnicus, which is highly likely to result in misdiagnosis if inappropriate diagnostic method are used.Case presentationA 29-year-old Chinese male patient with no underlying disease was hospitalized twice for injuries caused by a car accident. During the second hospitalization, abdominal surgery was performed and high fever developed after the surgery. A strain of O. splanchnicus was isolated from the blood and confirmed by MALDI-TOF-MS and 16S rRNA gene analysis. Finally, the patient recovered successfully by using antibiotics, fluid replacement and albumin input.ConclusionsThis is the first case of O. splanchnicus bacteremia in China. We present a brief review of the cases concerning O. splanchnicus infection in humans. O. splanchnicus, as part of the normal intestinal flora, is well known for its anti-tumor and immune regulating properties, it is rarely isolated from clinical samples. This case illustrates the potential of O. splanchnicus as a pathogen and suggests attention to the use of new and advanced methods like MALDI-TOF MS and 16S rRNA gene sequencing to identify rarely isolated species from clinical samples.
| S-EPMC10770558 | biostudies-literature
Project description:Strain Odoribacter splanchnicus TSDC17.2-1.1 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 49). The species name was assigned by genome clustering.
| PRJEB3767 | ENA
Project description:Strain Odoribacter splanchnicus TSDC17.2-1.2 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 49). The species name was assigned by genome clustering.
| PRJEB3768 | ENA
Project description:Strain Odoribacter splanchnicus TSDC19.1-1.2 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.
| PRJEB3802 | ENA
Project description:Strain Odoribacter splanchnicus TSDC19.1-1.3 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.
| PRJEB3803 | ENA
Project description:Strain Odoribacter splanchnicus TSDC17.1-1.1 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 49). The species name was assigned by genome clustering.
| PRJEB3723 | ENA
Project description:Strain Odoribacter splanchnicus TSDC19.1-1.1 (species Odoribacter splanchnicus) was isolated from the fecal microbiota of a USA female at time point zero (bacterial isolates were sequenced from this donor on day 0 and 47). The species name was assigned by genome clustering.
| PRJEB3801 | ENA