Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Armillaria ostoyae

ABSTRACT: Armillaria ostoyae overview

PROVIDER: PRJNA198751 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	ERR12245603_1.fastq.gz	Fastqsanger.gz
	ERR12245603_2.fastq.gz	Fastqsanger.gz
	ERR12205276.fastq.gz	Fastqsanger.gz
	SRR11680501_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 110

Similar Datasets

Armillaria ostoyae

Project description:Armillaria ostoyae Genome sequencing

| PRJNA575235 | ENA

Armillaria ostoyae RNA1

Project description:Armillaria ostoyae RNA1 Transcriptome or Gene expression

| PRJNA192550 | ENA

Armillaria ostoyae RNA1

Project description:Armillaria ostoyae RNA1 Transcriptome or Gene expression

| PRJNA179157 | ENA

Hallmarks of basidiomycete soft- and white-rot in wood-decay -omics data of Armillaria [ARCE]

Project description:The genus Armillaria spp. (Fungi, Basidiomycota) includes devastating pathogens of temperate forests and saprotrophs that decay wood. Pathogenic and saprotrophic Armillaria species can efficiently colonize and decay woody substrates, however, mechanisms of wood penetration and colonization are poorly known. We assayed the colonization and decay of autoclaved spruce roots using the conifer-specialists Armillaria ostoyae and A. cepistipes using transcriptomic and proteomic data. Transcript and protein levels were altered more extensively in the saprotrophic A. cepistipes than in the pathogenic A. ostoyae and in invasive mycelia of both species compared to their rhizomorphs. Diverse suites of carbohydrate-active enzyme genes (CAZymes), in particular pectinolytic ones and expansins, were upregulated in both species, whereas ligninolytic genes were mostly downregulated. Our gene expression data, together with previous comparative genomic and decay-chemistry analyses suggest that wood decay by Armillaria differs from that of typical white rot fungi and shows features resembling soft rot. We propose that Armillaria species have modified the ancestral white rot machinery so that it allows for selective ligninolysis based on environmental conditions and/or host types.

2020-05-04 | GSE149725 | GEO

Hallmarks of basidiomycete soft- and white-rot in wood-decay -omics data of Armillaria [AROC18]

2020-05-04 | GSE149701 | GEO

Armillaria ostoyae

Project description:Lineage-specific genetic innovations streamline the genomes of Armillaria species to pathogenesis

| PRJNA390997 | ENA

Armillaria solidipes strain:28-4

Project description:Armillaria ostoyae Standard Draft genome sequencing

| PRJNA334329 | ENA

Armillaria

Project description:Armillaria sp. overview

| PRJNA930115 | ENA