Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Upper respiratory tract metagenome

ABSTRACT: Upper respiratory tract microbiomes of pandemic H1N1 patients

PROVIDER: PRJNA200951 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR836421.fastq.gz	Fastqsanger.gz
	SRR836422.fastq.gz	Fastqsanger.gz
	SRR836423.fastq.gz	Fastqsanger.gz
	SRR836424.fastq.gz	Fastqsanger.gz
	SRR836425.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 65

Similar Datasets

Upper Respiratory tract Metagenome

Project description:Upper Respiratory tract Metagenome

| PRJNA1021628 | ENA

upper respiratory tract metagenome

Project description:Upper respiratory tract microbiota Metagenome

| PRJNA209575 | ENA

upper respiratory tract metagenome

Project description:Upper respiratory tract metagenome Raw sequence reads

| PRJNA401637 | ENA

upper respiratory tract metagenome

Project description:upper respiratory tract metagenome Raw sequence reads

| PRJNA434486 | ENA

Upper respiratory tract microbiota.

Project description:Isolates cultured from the human upper respiratory tract. Raw sequence reads.

| PRJNA381557 | ENA

Upper respiratory tract of turkeys

Project description:Bacterial communities in the upper respiratory tract of turkeys

| PRJEB39217 | ENA

Analysis of blood and nasal epithelial transcriptomes to identify mechanisms associated with control of SARS-CoV-2 viral load in the upper respiratory tract

Project description:The amount of SARS-CoV-2 detected in the upper respiratory tract (URT viral load) is a key driver of transmission of infection. Current evidence suggests that mechanisms constraining URT viral load are different from those controlling lower respiratory tract viral load and disease severity. Understanding such mechanisms may help to develop treatments and vaccine strategies to reduce transmission. Combining mathematical modelling of URT viral load dynamics with transcriptome analyses we aimed to identify mechanisms controlling URT viral load. COVID-19 patients were recruited in Spain during the first wave of the pandemic. RNA sequencing of peripheral blood and targeted NanoString nCounter transcriptome analysis of nasal epithelium were performed and gene expression analysed in relation to paired URT viral load samples collected within 15 days of symptom onset. Proportions of major immune cells in blood were estimated from transcriptional data using computational differential estimation. Weighted correlation network analysis (adjusted for cell proportions) and fixed transcriptional repertoire analysis were used to identify associations with URT viral load, quantified as standard deviations (z-scores) from an expected trajectory over time.

2023-04-01 | E-MTAB-12791 | biostudies-arrayexpress

upper respiratory tract metagenome

Project description:Microbiome diversity in the upper respiratory tract of ferrets during influenza virus infection

| PRJNA429212 | ENA

upper respiratory tract metagenome

Project description:Role of microbiome diversity, in the Upper Respiratory Tract of humans in influenza virus infection

| PRJNA240562 | ENA

Characterization of antibiotic resistance and host-microbiome interactions in the human upper respiratory tract during influenza infection [RNA-Seq]

Project description:Antibiotic resistance genes expressed in the upper respiratory tract of patients infected with influenza viruses were associated with the microbial community and microbial activities. Interactions between the host systemic responses to influenza infection and ARG expression highlight the importance of antibiotic resistance in viral-bacterial co-infection.

2020-03-19 | GSE126901 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data