Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Methylobacterium nodulans ORS 2060

ABSTRACT: Nitrogen-fixing methylotroph

PROVIDER: PRJNA20477 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR000258.fastq.gz	Fastqsanger.gz
	SRR000259.fastq.gz	Fastqsanger.gz
	SRR000260.fastq.gz	Fastqsanger.gz
	SRR000261.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Azorhizobium caulinodans ORS 571

Project description:A stem-nodulating nitrogen-fixing bacteria

| PRJNA19267 | ENA

Azorhizobium caulinodans ORS 571

Project description:A stem-nodulating nitrogen-fixing bacteria

| PRJDA19267 | ENA

Formaldehyde stress response in Methylobacterium extorquens AM1

2015-01-01 | GSE15631 | GEO

Formaldehyde stress response in Methylobacterium extorquens AM1

Project description:The goal of this study was to use microarrays to identify genes differentially regulated under conditions of formaldehyde stress relative to two other stress conditions (oxidative, osmotic) in an effort to identify genes that might be involved in a formaldehyde-specific stress response, rather than a general stress response, in the model methylotroph Methylobacterium extorquens AM1. Two color experiment, three treatments, three biological replicates per treatment, and two technical (dye swap) replicates per biological replicate: formaldehyde-stressed vs. unstressed cells; oxidative-stressed vs. unstressed cells; and osmotic-stressed vs. unstressed cells.

2015-01-01 | E-GEOD-15631 | biostudies-arrayexpress

Transcriptome comparison of wild type Azoarcus sp. strain BH72 grown under nitrogen fixation (experiment) with cells grown with combined nitrogen (ammonia) as nitrogen source

Project description:Model endophyte Azoarcus sp. BH72 is known to contribute fixed nitrogen to its host Kallar grass by nitrogen fixation and also expresses nitrogenase genes endophytically in rice seedlings in gnotobiotic culture. Availability of fixed nitrogen is one of the important signals regulating the transcription of nitrogenase genes and hence nitrogen fixing activity. Therefore, we analysed global transcription in response to differences in the nitrogen source. Transcription profiles of cells grown microaerobically (0.6% oxygen) on minimal medium with nitrogen (N2-fixing) versus ammonium (combined nitrogen) were compared using a genome-wide microarray approach and differences in the gene expression profile were monitored.

2013-08-01 | GSE49394 | GEO

Transcriptome comparison of the wild type strain Azoarcus sp. BH72 with that of nifLA knockout strain under nitrogen fixing condition

Project description:Azoarcus sp. BH72 is known to express nitrogenase genes endophytically in rice seedlings in gnotobiotic culture. Availability of fixed nitrogen is one of the important signals regulating the transcription of nitrogenase genes and hence nitrogen fixing activity. NifA is the essential transcription activator of nif genes. RNA isolated from the nifA knockout mutant of strain BH72 was compared with the transcriptome of wild type under nitrogen fixing condition using a global genome wide microarray approach and the differences in the gene expression profile were monitered.

2013-08-15 | GSE49912 | GEO

Azotobacter vinelandii DJ strain:DJ

Project description:Nitrogen-fixing bacterium

| PRJNA16 | ENA

Rhodobacter capsulatus

Project description:Nitrogen-fixing phototroph

| PRJNA35231 | ENA

Rippkaea orientalis PCC 8801

Project description:Nitrogen-fixing cyanobacterium

| PRJNA20503 | ENA

Sinorhizobium meliloti 1021

Project description:Nitrogen-fixing bacterium