Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Colletotrichum graminicola

ABSTRACT: Colletotrichum graminicola Genome sequencing

PROVIDER: PRJNA213370 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1505770.fastq.gz	Fastqsanger.gz
	SRR1503451.fastq.gz	Fastqsanger.gz
	SRR1505752.fastq.gz	Fastqsanger.gz
	SRR1505792.fastq.gz	Fastqsanger.gz
	SRR1507066.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Maize gene expression during infection with Colletotrichum graminicola

Project description:The hemibiotrophic fungal pathogen Colletotrichum graminicola is the causal agent of anthracnose disease on maize stalks and leaves. After the formation of appressoria the host cell wall is penetrated by the conversion of appressorial turgor pressure into forceful ejection of a penetration peg. Subsequently, C. graminicola establishes biotrophic hyphae in the penetrated epidermis cell at around 36 hours post inoculation (hpi) until a switch of hyphal morphology and lifestyle takes place during the colonization of neighboring host cells at around 72 hpi. During the ensuing necrotrophic growth, dark necrotic lesions are formed that are visible as anthracnose symptoms. We used microarrays to detail the global programme of gene expression during the infection process of Colletotrichum graminicola in its host plant to get insight into the defense response of this compatible interaction and into the metabolic reprogramming needed to supply the fungus with nutrients. In three independent experiments, maize plants were infected with conidia of the Colletotrichum graminicola strain CgM2 by spray inoculation of leaves. Samples from infected leaves were taken at 36 and 96 hours post infection, corresponding to initial biotrophic and necrotrophic phase, respectively. Samples from uninfected control plants were taken at the same time points.

2011-08-03 | E-GEOD-31188 | biostudies-arrayexpress

Maize gene expression during infection with Colletotrichum graminicola

2011-08-04 | GSE31188 | GEO

Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths

Project description:Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths

2012-06-04 | GSE34632 | GEO

Colletotrichum graminicola

Project description:Colletotrichum graminicola Raw sequence reads

| PRJNA876621 | ENA

Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths

Project description:Transcriptome of 3 developmental stages of Colletotrichum graminicola during infection of Zea mays leaf sheaths 3 biological replicates per stage. The three stages are: pre-penetration appressoria (PA), early biotrophic phase (BP), and the switch from biotrophy to necrotrophy (NP). Each biological replicate of the first stage, the pre-penetration appressoria, was sequenced to a 2-fold greater depth due to its lower representation in the samples.

2012-06-04 | E-GEOD-34632 | biostudies-arrayexpress

Colletotrichum graminicola isolate:LARS318

Project description:Colletotrichum graminicola isolate:LARS318 Genome sequencing and assembly

| PRJNA815850 | ENA

Colletotrichum graminicola isolate:NRRL13649

Project description:Colletotrichum graminicola isolate:NRRL13649 Genome sequencing and assembly

| PRJNA815856 | ENA

Colletotrichum graminicola isolate:NRRL47511

Project description:Colletotrichum graminicola isolate:NRRL47511 Genome sequencing and assembly

| PRJNA815857 | ENA

Colletotrichum graminicola isolate:DMSZ63127

Project description:Colletotrichum graminicola isolate:DMSZ63127 Genome sequencing and assembly