Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saccharomyces cerevisiae Red Star baking yeast

ABSTRACT: The sequencing of Saccharomyces cerevisiae strains.

PROVIDER: PRJNA215480 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Similar Datasets

CGH of natural Saccharomyces cerevisiae strains

Project description:Comparative Genomic Hybridization of natural Saccharomyces cerevisiae strains vs lab reference strains.

2020-12-31 | GSE136466 | GEO

Saccharomyces cerevisiae Fleischmanns baking yeast

Project description:The sequencing of Saccharomyces cerevisiae strains.

| PRJNA215479 | ENA

Array competitive genomic hybridization of three Saccharomyces cerevisiae strains vs. DBY8268

Project description:A six array study using total gDNA recovered from two separate cultures of each of three different strains of Saccharomyces cerevisiae (YB-210 or CRB, Y389 or MUSH, and Y2209 or LEP) and two separate cultures of Saccharomyces cerevisiae DBY8268. Each array measures the hybridization of probes tiled across the Saccharomyces cerevisiae genome.

2014-10-01 | GSE56441 | GEO

Analysis of the Saccharomyces cerevisiae Pan-Genome Reveals a Pool of Copy Number Variants Distributed in Diverse Yeast Strains From Differing Industrial Environments.

Project description:We created a multi-species microarray platform, containing probes to the whole genomes of seven different Saccharomyces species, with very dense coverage (one probe every ~500 bp) of the S. cerevisiae genome, including non-S288c regions, mitochondrial and 2 micron circle genomes, plus probes at fairly dense coverage (one probe every ~2,100 bp) for each of the genomes of six other Saccharomyces species: S. paradoxus, S. mikatae, S. kudriavzevii, S. bayanus, S. kluyveri and S. castellii. We performed array-Comparative Genomic Hybridization (aCGH) using this platform, examining 83 different Saccharomyces strains collected across a wide range of habitats; of these, 69 were widely used commercial S. cerevisiae wine strains, while the remaining 14 were from a wide range of other industrial and natural habitats. Thus, we were able to sample much of the pan-genome space of the Saccharomyces genus. We observed interspecific hybridization events, introgression events, and pervasive copy number variation (CNV) in all but a few of the strains. These CNVs were distributed throughout the strains such that they did not produce any clear phylogeny, suggesting extensive mating in both industrial and wild strains. To validate our results and to determine whether apparently similar introgressions and CNVs were identical by descent or recurrent, we also performed whole genome sequencing on nine of these strains. These data may help pinpoint genomic regions involved in adaptation to different industrial milieus, as well as shed light on the course of domestication of S. cerevisiae.

2012-02-01 | GSE26689 | GEO

Saccharomyces cerevisiae

Project description:The sequencing of Saccharomyces cerevisiae strains.

| PRJNA215452 | ENA

Saccharomyces cerevisiae

Project description:The sequencing of Saccharomyces cerevisiae strains.

| PRJNA215451 | ENA

Saccharomyces cerevisiae

Project description:The sequencing of Saccharomyces cerevisiae strains.

| PRJNA215453 | ENA

Expression data from Saccharomyces cerevisiae

Project description:Saccharomyces cerevisiae is an excellent microorganism for industrial succinic acid production, but high succinic acid concentration will inhibit the growth of Saccharomyces cerevisiae then reduce the production of succinic acid. Through analysis the transcriptomic data of Saccharomyces cerevisiae with different genetic backgrounds under different succinic acid stress, we hope to find the response mechanism of Saccharomyces cerevisiae to succinic acid.

2022-01-09 | GSE193190 | GEO

Saccharomyces cerevisiae W303

Project description:The sequencing of Saccharomyces cerevisiae strains.

| PRJNA205542 | ENA

Saccharomyces cerevisiae YJM432

Project description:The sequencing of Saccharomyces cerevisiae strains.

| PRJNA215481 | ENA