Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Arabidopsis thaliana strain:Col-0

ABSTRACT: RNA-Seq timeseries of Arabidopsis Mock, JA or SA treated

PROVIDER: PRJNA224133 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1038660.fastq.gz	Fastqsanger.gz
	SRR1038670.fastq.gz	Fastqsanger.gz
	SRR1038680.fastq.gz	Fastqsanger.gz
	SRR1038690.fastq.gz	Fastqsanger.gz
	SRR1038700.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 734

Similar Datasets

Exogenous slaicylic acid (SA) treatment of Arabidopsis thaliana Col-0

2011-11-03 | GSE33402 | GEO

Exogenous slaicylic acid (SA) treatment of Arabidopsis thaliana Col-0

Project description:0.5 mM SA plus 0.02% Silwet or 0.02% Silwet (control) was sprayed on leaves of 3.5 week old Arabidopsis plants. Samples were harvested at 0 (prior to treatment) , 3, 6, 12, and 24 hours post treatment. A subset of these samples were processed. Arabidopsis plants grown in parallel under standardized conditions were treated with SA + Silwet or Silwet alone (control). Only mature leaves of the same developmental age were harvested using leaves from 2-4 plants, totalling ~0.2 grams per sample. Plants were not resampled. In our hands, experimental replicates are highly reproducible. This was an exploratory experiment to look for candidate genes impacted by exogenous SA treatment. We were only able to process a subset of samples and chose to process key time points, sacrificing replicates at each time point.

2011-11-03 | E-GEOD-33402 | biostudies-arrayexpress

Arabidopsis thaliana

Project description:ChIP-seq of Arabidopsis transcription coactivator NPR1 treated with SA and JA

| PRJDB10143 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 Gene Expression Profiling - EVB3 SA transcriptome

| PRJNA697103 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 Gene Expression Profiling - C44 SA transcriptome

| PRJNA697066 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 Gene Expression Profiling - B25 SA transcriptome

| PRJNA697057 | ENA

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 Gene Expression Profiling - WT3 SA transcriptome

| PRJNA697094 | ENA

Expression profiling of uninfected and Golovinomyces orontii infected Arabidopsis thaliana wild type Col-0 and del1-1 mutant

Project description:In plants, the activation of immunity is often inversely correlated with growth. Mechanisms that plant growth in the context of pathogen challenge and immunity are unclear. Investigating Arabidopsis infection with the powdery mildew fungus, we find that the Arabidopsis atypical E2F DEL1, a transcriptional repressor known to promote cell proliferation, represses accumulation of the hormone salicylic acid (SA), an established regulator of plant immunity. DEL1 deficient plants are more resistant to pathogens and slightly smaller than wild type. The resistance and size phenotypes of DEL1 deficient plants are due to the induction of SA and activation of immunity in the absence of pathogen challenge. Moreover, Enhanced Disease Susceptibility 5 (EDS5), a SA transporter required for elevated SA and immunity, is a direct repressed target of DEL1. Together, these findings indicate that DEL1 control of SA levels contributes to regulating the balance between growth and immunity in developing leaves.

2014-04-30 | GSE40973 | GEO

Whole genome bisulfite sequencing of five-week-old Arabidopsis thaliana (ecotype Col-0) plants from water and jasmonic acid treated seedlings.

Project description:Treatment of Arabidopsis thaliana (ecotype Col-0) seedlings with jasmonic acid (JA) elicits long-term induced resistance (IR) against the chewing herbivore Spodoptera littoralis. We used whole genome bisulfite-seq to profile the methylome associated with this long-lasting JA-IR.

2022-11-07 | GSE163262 | GEO

Arabidopsis thaliana cultivar:Col-0

Project description:Arabidopsis thaliana Col-0 Gene Expression Profiling - C44 SA-5 transcriptome

| PRJNA696760 | ENA