Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Danio rerio

ABSTRACT: Genome-wide profiling of Smad2 and Eomesa binding in zebrafish blastulas

PROVIDER: PRJNA225690 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1021220.fastq.gz	Fastqsanger.gz
	SRR1021221.fastq.gz	Fastqsanger.gz
	SRR1021222.fastq.gz	Fastqsanger.gz
	SRR1021223.fastq.gz	Fastqsanger.gz
	SRR1021217.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 7

Similar Datasets

Danio rerio

Project description:Genome-wide analysis of Smad2 and FoxH1 binding sites in zebrafish blastula

| PRJNA280533 | ENA

Danio rerio

Project description:Genome-wide profiling of Tbx6myc binding during zebrafish somitogenesis

| PRJNA246287 | ENA

Danio rerio

Project description:Genome-wide profiling of Ta, Tbx16 and Mixl1 binding in early zebrafish embryos

| PRJNA330635 | ENA

Danio rerio

Project description:Genome-wide mapping of Hif-1α binding sites in zebrafish [microarray]

| PRJNA289856 | ENA

Danio rerio

Project description:Genome-wide mapping of Hif-1α binding sites in zebrafish [ChIP-seq]

| PRJNA289449 | ENA

Role of the Exon Junction Complex in Danio rerio

Project description:The exon junction complex (EJC) is composed of three core proteins Rbm8a, Magoh and Eif4a3 and is thought to play a role in several post-transcriptional processes. In this study we focus on understanding the role of EJC in zebrafish development. We identified transcriptome-wide binding sites of EJC in zebrafish via RNA:protein immunoprecipitation followed by deep sequencing (RIP-Seq). We find that, as in human cells, zebrafish EJC is deposited about 24 nts upstream of exon-exon junctions. We also identify transcripts regulated by Rbm8a and Magoh in zebrafish embryos using whole embryo RNA-seq from rbm8a mutant, magoh mutant and wild-type sibling embryos. This study shows that nonsense mediated mRNA decay is dysregulated in zebrafish EJC mutants.

2019-07-30 | GSE135019 | GEO

Danio rerio

Project description:Genome-wide maps of binding sites of Nanog-like and Mxtx2 in blastula stage zebrafish embryos

| PRJNA156233 | ENA

Danio rerio

Project description:Genome-wide identification of putative cis-regulatory elements through epigenetic profiling in zebrafish

| PRJNA124889 | ENA

Danio rerio

Project description:Genome-wide DNA methylation map of Zebrafish liver

| PRJNA257062 | ENA

Danio rerio

Project description:Genome wide expression profiling during spinal cord regeneration identifies comprehensive cellular responses in zebrafish