Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Eremothecium coryli CBS 5749

ABSTRACT: Eremothecium coryli CBS 5749 Genome sequencing and assembly

PROVIDER: PRJNA229863 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	AZAH01.dat.gz	Other
	AZAH01.fasta.gz	Fasta.gz
	AZAH01.master.dat	Other
	AZAH01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Eremothecium coryli

Project description:First report of kernel dry rot caused by Eremothecium coryli on hazelnut in Piedmont

| PRJEB25575 | ENA

Eremothecium coryli

Project description:First report of kernel dry rot caused by Eremothecium coryli on hazelnut in Piedmont

| PRJEB25573 | ENA

Eremothecium

Project description:Eremothecium Organism overview

| PRJNA41207 | ENA

Apoderus coryli

Project description:Apoderus coryli overview

| PRJNA750204 | ENA

Streptomyces coryli strain:A7024

Project description:Streptomyces coryli strain:A7024 Genome sequencing and assembly

| PRJNA607622 | ENA

Chromosome number reduction in Eremothecium coryli by two telomere-to-telomere fusions.

Project description:The genus Eremothecium belongs to the Saccharomyces complex of pre-whole-genome duplication (WGD) yeasts and contains both dimorphic and filamentous species. We established the 9.1-Mb draft genome of Eremothecium coryli, which encodes 4,682 genes, 186 tRNA genes, and harbors several Ty3 transposons as well as more than 60 remnants of transposition events (LTRs). The initial de novo assembly resulted in 19 scaffolds, which were assembled based on synteny to other Eremothecium genomes into six chromosomes. Interestingly, we identified eight E. coryli loci that bear centromeres in the closely related species E. cymbalariae. Two of these E. coryli loci, CEN1 and CEN8, however, lack conserved DNA elements and did not convey centromere function in a plasmid stability assay. Correspondingly, using a comparative genomics approach we identified two telomere-to-telomere fusion events in E. coryli as the cause of chromosome number reduction from eight to six chromosomes. Finally, with the genome sequences of E. coryli, E. cymbalariae, and Ashbya gossypii a reconstruction of three complete chromosomes of an Eremothecium ancestor revealed that E. coryli is more syntenic to this ancestor than the other Eremothecium species.

| S-EPMC4040997 | biostudies-literature

Eremothecium cymbalariae DBVPG#7215

Project description:Eremothecium cymbalariae DBVPG#7215 genome sequencing

| PRJNA60715 | ENA

Eremothecium sinecaudum strain:ATCC 58844

Project description:Eremothecium sinecaudum strain:ATCC 58844 Genome sequencing and assembly

| PRJNA310026 | ENA

Pseudomonas syringae pv. coryli str. NCPPB 4273

Project description:Pseudomonas syringae pv. coryli str. NCPPB 4273 Genome sequencing and assembly

| PRJNA218056 | ENA

Expression analysis of Pichia stipitis CBS 6054 grown in glucose or xylose

Project description:Investigation of whole genome gene expression level changes in Pichia stipitis CBS 6054 grown aerobically in xylose, compared to the same strain grown aerobically in glucose. A six array study using total RNA recovered from three separate cultures of Pichia stipitis CBS 6054 grown in glucose and three separate cultures of Pichia stipitis CBS 6054 grown in xylose. Each array measures the expression level of 374,100 probes (average probe length 53.6 +/- 4.1 nt) tiled across the Pichia stipitis CBS 6054 genome with a median spacing distance of 33 nt. During data processing, probes are filtered to include only those probes corresponding to annotated protein-coding genes.

2011-10-19 | E-GEOD-24854 | biostudies-arrayexpress

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data