Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ceratosolen solmsi

ABSTRACT: Ceratosolen solmsi overview

PROVIDER: PRJNA230854 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR5343950.fastq.gz	Fastqsanger.gz
	SRR5343951.fastq.gz	Fastqsanger.gz
	SRR5343961.fastq.gz	Fastqsanger.gz
	SRR5343935.fastq.gz	Fastqsanger.gz
	SRR5343948.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 22

Similar Datasets

Ceratosolen solmsi marchali

Project description:Ceratosolen solmsi marchali Genome sequencing and assembly

| PRJNA178998 | ENA

Ceratosolen solmsi marchali

Project description:Ceratosolen solmsi marchali small RNA Raw sequence reads

| PRJNA379062 | ENA

Ceratosolen fusciceps

Project description:Ceratosolen fusciceps overview

| PRJNA1122897 | ENA

Wolbachia endosymbiont of Ceratosolen solmsi strain:wCsol

Project description:Wolbachia endosymbiont of Ceratosolen solmsi strain:wCsol Genome sequencing

| PRJNA637982 | ENA

Ceratosolen solmsi

Project description:fig wasp transcriptome

| PRJNA218151 | ENA

Evolution and expression plasticity of opsin genes in a fig pollinator, Ceratosolen solmsi.

Project description:Figs and fig pollinators have co-evolved species-specific systems of mutualism. So far, it was unknown how visual opsin genes of pollinators have evolved in the light conditions inside their host figs. We cloned intact full-length mRNA sequences of four opsin genes from a species of fig pollinator, Ceratosolen solmsi, and tested for selective pressure and expressional plasticity of these genes. Molecular evolutionary analysis indicated that the four opsin genes evolved under different selective constraints. Subsets of codons in the two long wavelength sensitive opsin (LW1, LW2) genes were positively selected in ancestral fig pollinators. The ultraviolet sensitive opsin (UV) gene was under strong purifying selection, whereas a relaxation of selective constrains occurred on several amino acids in the blue opsin. RT-qPCR analysis suggested that female and male fig pollinators had different expression patterns possibly due to their distinct lifestyles and different responses to light within the syconia. Co-evolutionary history with figs might have influenced the evolution and expression plasticity of opsin genes in fig pollinators.

| S-EPMC3547053 | biostudies-literature

Ceratosolen fusciceps

Project description:Ceratosolen fusciceps Genome sequencing and assembly

| PRJNA494992 | ENA

New insights into the fungal community from the raw genomic sequence data of fig wasp Ceratosolen solmsi.

Project description:BackgroundTo date, biologists have discovered a large amount of valuable information from assembled genomes, but the abundant microbial data that is hidden in the raw genomic sequence data of plants and animals is usually ignored. In this study, the richness and composition of fungal community were determined in the raw genomic sequence data of Ceratosolen solmsi (RGSD-CS).ResultsTo avoid the interference from sequences of C. solmsi, the unmapped raw data (about 17.1%) was obtained by excluding the assembled genome of C. solmsi from RGSD-CS. Comparing two fungal reference datasets, internal transcribed spacer (ITS) and large ribosomal subunit (LSU) of rRNA, the ITS dataset discovered a more diverse fungal community and was therefore selected as the reference dataset for evaluating the fungal community based on the unmapped raw data. The threshold of 95% sequence identity revealed many more matched fungal reads and fungal richness in the unmapped raw data than those by identities above 95%. Based on the threshold of 95% sequence identity, the fungal community of RGSD-CS was primarily composed of Saccharomycetes (88.4%) and two other classes (Agaricomycetes and Sordariomycetes, 8.3% in total). Compared with the fungal community of other reported fig wasps, Agaricomycetes and Eurotiomycetes were found to be unique to C. solmsi. In addition, the ratio of total fungal reads to RGSD-CS was estimated to be at least 4.8 × 10(-3), which indicated that a large amount of fungal data was contained in RGSD-CS. However, rarefaction measure indicated that a deeper sequencing coverage with RGSD-CS was required to discover the entire fungal community of C. solmsi.ConclusionThis study investigated the richness and composition of fungal community in RGSD-CS and provided new insights into the efficient study of microbial diversity using raw genomic sequence data.

| S-EPMC4329198 | biostudies-literature

Ceratosolen fusciceps isolate:HK-2024

Project description:Ceratosolen fusciceps isolate:HK-2024 Genome sequencing

| PRJNA1122399 | ENA

Project description:phylogenomics UCEs Ceratosolen spp. ex F. septica Philippines

| PRJNA682415 | ENA