Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Porphyra umbilicalis

ABSTRACT: Porphyra umbilicalis Genome sequencing and assembly

PROVIDER: PRJNA234409 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR071740_1.fastq.gz	Fastqsanger.gz
	SRR071740_2.fastq.gz	Fastqsanger.gz
	SRR071741_1.fastq.gz	Fastqsanger.gz
	SRR071741_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 166

Similar Datasets

Porphyra umbilicalis

Project description:Porphyra umbilicalis Genome sequencing

| PRJNA337649 | ENA

Porphyra umbilicalis

Project description:Porphyra umbilicalis overview

| PRJNA84039 | ENA

Porphyra umbilicalis

Project description:Porphyra umbilicalis Transcriptome or Gene expression

| PRJNA372990 | ENA

Porphyra umbilicalis

Project description:Porphyra umbilicalus Project

| PRJNA79823 | ENA

Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis

Project description:This study provides a first large-scale cloning and characterization of Porphyra miRNAs and their predicted targets. These miRNAs belong to 224 conserved miRNA families and 7 are novel in Porphyra. These miRNAs add to the growing database of new miRNA and lay the foundation for further understanding of miRNA function in the regulation of Porphyra yezoensis development.

2010-06-04 | GSE20534 | GEO

Identification of miRNA from Porphyra yezoensis by high-throughput sequencing and bioinformatics analysis

2010-06-04 | E-GEOD-20534 | biostudies-arrayexpress

Porphyra purpurea

Project description:Porphyra purpurea EST - Porpur_conchocelis transcriptome

| PRJNA584538 | ENA

Porphyra purpurea

Project description:Porphyra purpurea EST - Porpu_nutrient transcriptome

| PRJNA584537 | ENA

Genome Analysis of Planctomycetes Inhabiting Blades of the Red Alga Porphyra umbilicalis.

Project description:Porphyra is a macrophytic red alga of the Bangiales that is important ecologically and economically. We describe the genomes of three bacteria in the phylum Planctomycetes (designated P1, P2 and P3) that were isolated from blades of Porphyra umbilicalis (P.um.1). These three Operational Taxonomic Units (OTUs) belong to distinct genera; P2 belongs to the genus Rhodopirellula, while P1 and P3 represent undescribed genera within the Planctomycetes. Comparative analyses of the P1, P2 and P3 genomes show large expansions of distinct gene families, which can be widespread throughout the Planctomycetes (e.g., protein kinases, sensors/response regulators) and may relate to specific habitat (e.g., sulfatase gene expansions in marine Planctomycetes) or phylogenetic position. Notably, there are major differences among the Planctomycetes in the numbers and sub-functional diversity of enzymes (e.g., sulfatases, glycoside hydrolases, polysaccharide lyases) that allow these bacteria to access a range of sulfated polysaccharides in macroalgal cell walls. These differences suggest that the microbes have varied capacities for feeding on fixed carbon in the cell walls of P.um.1 and other macrophytic algae, although the activities among the various bacteria might be functionally complementary in situ. Additionally, phylogenetic analyses indicate augmentation of gene functions through expansions arising from gene duplications and horizontal gene transfers; examples include genes involved in cell wall degradation (e.g., κ-carrageenase, alginate lyase, fucosidase) and stress responses (e.g., efflux pump, amino acid transporter). Finally P1 and P2 contain various genes encoding selenoproteins, many of which are enzymes that ameliorate the impact of environmental stresses that occur in the intertidal habitat.

| S-EPMC4807772 | biostudies-literature

The amino acid sequence of ferredoxin from the red alga Porphyra umbilicalis.

Project description:The amino acid sequence of the ferrodoxin of Porphyra umbilicalis was determined by the dansyl-phenyl isothiocyanate method, on peptides obtained by tryptic, chymotryptic and thermolytic digestion of the protein or its CNBr-cleavage fragments. The molecule consists of 98 residues, has an unblocked N-terminus and shows considerable similarity with other plant-type ferredoxins. It is the first reported sequence of a red-algal ferredoxin.

| S-EPMC1185799 | biostudies-other

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data