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Bacillus amyloliquefaciens

ABSTRACT: Transcriptomics of Bacillus amyloliquefaciens SQR9 to maize root exudates

PROVIDER: PRJNA238210 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1168515_1.fastq.gz	Fastqsanger.gz
	SRR1168515_2.fastq.gz	Fastqsanger.gz
	SRR1168516_1.fastq.gz	Fastqsanger.gz
	SRR1168516_2.fastq.gz	Fastqsanger.gz
	SRR1168517_1.fastq.gz	Fastqsanger.gz

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Transcriptomics of Bacillus amyloliquefaciens SQR9 to maize root exudates

2014-11-01 | GSE54987 | GEO

Transcriptomics of Bacillus amyloliquefaciens SQR9 to maize root exudates

Project description:Root exudates play an important role in plant-microbe interaction. The transcriptional profilings of plant growth-promoting rhizobacteria Bacillus amyloliquefaciens SQR9 in response to maize root exudates under static condition, were investigated by an Illumina RNA-seq for understanding the regulatory roles of the root exudates. 4 treatments, including 2 blank control (24 h and 48 h-post inoculation, named as 5 and 15, respectively), and 2 treatments with maize root exudates (24 h and 48 h-post inoculation, named as 7 and 17, respectively)

2014-11-01 | E-GEOD-54987 | biostudies-arrayexpress

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Project description:The transcriptomic response of Bacillus amyloliquefaciens FZB42 to maize root exudates at OD600=3.0. This is a comprehensive analysis using the data of six microarray experiments (Exp1-2-3 and ExpABC respectively, 18 hybridization in total).

2011-11-01 | E-MEXP-3421 | biostudies-arrayexpress

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Project description:Transcription profiles of Bacillus amyloliquefacs FZB42 (cultured to an optical densit of 1.0 or 3.0) in response to root exudates from nutrient-sufficient maize plants and plants starved of nitrogen, phosphorus, potassium or iron.

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maize seed exudates - B. amyloliquefaciens FZB42

Project description:The effect of maize seed (Zea mays L. var. Surprise) exudates on Bacillus amyloliquefaciens FZB42 cultures grown to OD600 = 1.0 or 3.0 was tested against a negative seed exudate control sample.

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Borriss_FZB42_IE-RE

Project description:Transcription profiling by array of Bacillus amyloliquefaciens strain FZB42 after interaction exudates (IE) treatment, at OD600=1.0 and at OD600=1.0 respectively. IE was the root exudates prepared from maize plants growing with FZB42. The reference was treated with the root exudates (RE), prepared from maize plants grown in an axenic system.

2012-04-15 | E-MEXP-3553 | biostudies-arrayexpress

Acetylome analysis of Bacillus amyloliquefaciens

Project description:Lysine acetylation is a major post-translational modification that plays an important regulatory role in almost every aspects in both eukaryotes and prokaryotes. Bacillus amyloliquefaciens, a Gram-positive bacterium, is very effective for the control of plant pathogens. Here, we conducted the first lysine acetylome in B. amyloliquefaciens through a combination of highly sensitive immune-affinity purification and high-resolution LC−MS/MS. Overall, we identified 3268 lysine acetylation sites in 1254 proteins. Acetylated proteins are associated with a variety of biological processes and a large fraction of these proteins are involved in metabolism. These data serves as an important resource for further elucidation of the physiological role of lysine acetylation in B. amyloliquefaciens.

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Bacillus amyloliquefaciens

Project description:Gene expression data of bacillus amyloliquefaciens SQR9 in rhizosphere of cucumber

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Project description:Bacillus amyloliquefaciens FZB42 is a well-studied Gram-positive plant growth-promoting rhizobacteria. In this work we aim to study the effect of the effect of sigD deletion on the transcriptome of FZB42. The transcritomes were compared by two-color microarray of the sigD- mutant and the wildtype of B. amyloliquefaciens FZB42 grown in 1C medium supplemented with soil extract (SE) and in 1C medium supplemented with both SE and maize root exudates (RE). This submission includes data from three independent experiments with three biological replicates. Here a biological replicate means the bacterial culture from one flask used for RNA preparation. The samples were collected by two performers. The experiments were varied in sample performer, the date of the experiment.

2017-07-05 | E-MTAB-4636 | biostudies-arrayexpress

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