Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Candida tropicalis strain:121

ABSTRACT: Candida tropicalis 121 Genome sequencing

PROVIDER: PRJNA238598 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	JGYC01.dat.gz	Other
	JGYC01.fasta.gz	Fasta.gz
	JGYC01.master.dat	Other
	JGYC01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Proteogenomics of Candida tropicalis – an opportunistic pathogen

Project description:Candida tropicalis is an opportunistic pathogen which causes candidiasis in immune-compromised individuals. It is one of the members of the non-albicans group of Candida that are known to be azole resistant and is frequently seen in individuals being treated for cancers, HIV-infection and bone-marrow transplant. Although the genome of C. tropicalis was sequenced in the year 2009, the genome annotation has not been supported by experimental validation. In the present study, we have carried out in-depth proteomic profiling of C. tropicalis using high-resolution Fourier transform mass spectrometry and mapped ~44% of the computationally predicted protein-coding genes with peptide level evidence. In addition to identifying 2,740 proteins in the cell lysate of this yeast, we also analysed the proteome of the conditioned media of C. tropicalis culture and identified several unique secreted proteins among a total of 780 proteins. By subjecting the mass spectrometry data derived from cell lysate and conditioned media to proteogenomic analysis, we identified 86 novel genes, 12 novel exons and corrected 49 computationally predicted gene models. To our knowledge, this is the first high-throughput proteomic study to refine the genome annotation of C. tropicalis.

2017-05-08 | PXD001071 | Pride

Candida tropicalis

Project description:Candida tropicalis Genome sequencing

| PRJNA259321 | ENA

Homo sapiens whole blood infected with Candida spp. (here: Candida tropicalis)

Project description:Homo sapiens fresh whole blood was infected with Candida tropicalis. RNA-pool of both species extracted at 0min (control), 15, 30, 60, 120, 240 min. Samples are rRNA depleted. Measurement of Candida tropicalis gene expression.

2019-07-31 | GSE114178 | GEO

Candida tropicalis

Project description:Candida tropicalis Genome sequencing and assembly

| PRJNA1171791 | ENA

Candida tropicalis

Project description:Candida tropicalis Genome sequencing and assembly

| PRJNA1031262 | ENA

Candida tropicalis and Candida dubliniensis

Project description:Candida tropicalis and Candida dubliniensis Genome sequencing

| PRJNA555042 | ENA

Candida tropicalis strain:H5343

Project description:Candida tropicalis strain:H5343 Genome sequencing