Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Escherichia coli str. K-12 substr. MG1655

ABSTRACT: Transcription Pausing in E. coli

PROVIDER: PRJNA239516 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1184160.fastq.gz	Fastqsanger.gz
	SRR1184161.fastq.gz	Fastqsanger.gz
	SRR1182482.fastq.gz	Fastqsanger.gz
	SRR1182483.fastq.gz	Fastqsanger.gz
	SRR1182484.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655

Project description:Expression profiles of wild-type and SgrR mutant E. coli strains under aMG and 2-DG-induced stress. Expression profiles of E. coli overexpressing SgrS sRNA.

2013-03-26 | GSE45443 | GEO

RNA-seq analysis of Escherichia coli str. K-12 substr. MG1655

Project description:Expression profiles of wild-type and SgrR mutant E. coli strains under aMG and 2-DG-induced stress. Expression profiles of E. coli overexpressing SgrS sRNA. Illumina RNA-Seq of total RNA extracted from wild-type, SgrR/SgrS mutant and SgrS overexpressing E. coli strains grown in different conditions.

2013-03-26 | E-GEOD-45443 | biostudies-arrayexpress

Escherichia coli str. K-12 substr. MG1655

Project description:Transcription Pausing in E. coli (Part 2)

| PRJNA255639 | ENA

YAMAT-seq of mature tRNA pools in the bacterium Escherichia coli str. K-12 substr. MG1655 and derivatives

Project description:Mature tRNA pools were measured using an adaptation of YAMAT-seq (Shigematsu et al., 2017; doi:10.1093/nar/gkx005 ) and further described in (Ayan et al., 2020; doi:10.7554/eLife.57947) in 10 strain-medium combinations (all strains dervied from the model bacterium E. coli MG1655). The aim of the experiment was to investigate the effect of reducing tRNA gene copy number on mature tRNA pools in rich and poor media.

2022-12-02 | GSE198606 | GEO

Escherichia coli str. K-12 substr. MG1655

Project description:sRNA-mediated control of transcription termination in E. coli

| PRJNA328538 | ENA

Escherichia coli str. K-12 substr. MG1655 isolate:NB1246 and NB1247

Project description:Influence of Elongation Factor NusG on Transcription Pausing and Transcriptome in Escherichia coli

| PRJNA884691 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:Clarifying the translational pausing landscape in bacteria by ribosome profiling

| PRJNA295296 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:Genome-wide transcription analysis of Escherichia coli in response to extremely low-frequency magnetic fields

| PRJNA152601 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:Genome conformation capture reveals that the Escherichia coli chromosome is organized by replication and transcription

| PRJNA173452 | ENA

Escherichia coli str. K-12 substr. MG1655

Project description:High Precision Analysis of Translational Pausing in Bacteria Lacking EFP by Ribosome Profiling

| PRJNA271104 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data