Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Are abundant bacteria more active than rare bacteria in the Sargasso Sea?

PROVIDER: PRJNA242360 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1211842_subreads.fastq.gz	Fastqsanger.gz
	SRR1211893_subreads.fastq.gz	Fastqsanger.gz
	SRR1211874.fastq.gz	Fastqsanger.gz
	SRR1211819.fastq.gz	Fastqsanger.gz
	SRR1230754_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 20

Similar Datasets

Candidatus pelagibacter ubique HTCC1062 requires 4-amino-5-hydroxymethyl-2-methylpyrimidine, an abundant thiamine precursor in the sea

2015-01-20 | GSE46673 | GEO

marine metagenome

Project description:Sargasso Sea Bacterioplankton Community

| PRJNA73691 | ENA

marine metagenome

Project description:Sargasso Sea Environmental Sampling Metagenome

| PRJNA29043 | ENA

marine metagenome

Project description:Marine phages from the Sargasso Sea

| PRJNA17771 | ENA

Candidatus pelagibacter ubique HTCC1062 requires 4-amino-5-hydroxymethyl-2-methylpyrimidine, an abundant thiamine precursor in the sea

Project description:Thiamine is often undetectable in ocean surface waters where Pelagibacter cells are numerically abundant. Despite this, Pelagibacter cells are missing de novo thiamine synthesis pathways. We show that an eogenous source of the thiamine precursor HMP is required for thiamine synthesis in Pelagibacter and that this precursor is abundant in the Sargasso sea. Batch cultures of P. ubique were grown in a defined arificial seawater media. Three cultures were given no thiamine amendment, and three other cultures received an excess concentration of thiamine. Cultures were harvested for microarray analyses just prior to and after thiamine limitation for the purpose of observing differences in gene expression related to thiamine limitation.

2015-01-20 | E-GEOD-46673 | biostudies-arrayexpress

marine metagenome

Project description:2 samples from Sargasso Sea marine uncultured phage metagenome

| PRJNA47467 | ENA

marine metagenome

Project description:the assembly of abundant and rare bacterioplankton subcommunities in three subtropical bays

| PRJNA380540 | ENA

marine metagenome

Project description:Viral metagenomes from the Sargasso Sea (BIOS-SCOPE cruise AE1712)

| PRJNA767318 | ENA

marine metagenome

Project description:Deep sequencing of viral phoH gene from the Sargasso Sea