Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Apophysomyces

ABSTRACT: Whole Genome Sequence Typing to Investigate the Apophysomyces Outbreak following a Tornado in Joplin, Missouri, 2011

PROVIDER: PRJNA242444 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1258080_1.fastq.gz	Fastqsanger.gz
	SRR1258080_2.fastq.gz	Fastqsanger.gz
	SRR1258090_1.fastq.gz	Fastqsanger.gz
	SRR1258090_2.fastq.gz	Fastqsanger.gz
	SRR1258071_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 44

Similar Datasets

Apophysomyces

Project description:Apophysomyces sp. overview

| PRJNA470747 | ENA

Apophysomyces elegans

Project description:Apophysomyces elegans overview

| PRJNA185016 | ENA

Apophysomyces trapeziformis

Project description:Apophysomyces trapeziformis overview

| PRJNA185015 | ENA

Comparative genomic profiling and gene expression of Escherichia coli O103:H25 Oslo 2006 outbreak strain

2010-09-01 | GSE9418 | GEO

Apophysomyces sp. BC1015

Project description:Apophysomyces sp. BC1015 Resequencing

| PRJNA463337 | ENA

Apophysomyces sp. BC1034

Project description:Apophysomyces sp. BC1034 Resequencing

| PRJNA463335 | ENA

Apophysomyces sp. BC1021

Project description:Apophysomyces sp. BC1021 Resequencing

| PRJNA463336 | ENA

Comparative genomic profiling and gene expression of Escherichia coli O103:H25 Oslo 2006 outbreak strain

Project description:A food-borne outbreak of haemorrhagic colitis (HC) and HUS caused by E. coli O103:H25 occurred in Norway, 2006. The outbreak included 17 registered cases, of which 10 developed HUS. The aim of this study was to characterize two E. coli O103:H25 isolates from this outbreak. Only one of the isolates carry the stx2 gene (by PCR). Since they have the same typing profile by typing method MLVA, we expect the isolates to have identical gene content except from an Stx2-encoding phage. Therefore, we further investigate whether the Stx2-encoding phage has any impact on the gene expression. Keywords: mixed, gene expression, comparative genomic hybridization Triplicate samples of mRNA from a test strain O157:H7 EDL933 and two outbreak strains - one Stx positive and one stx negative were co-hybridized with genomic DNA from the same strain. Triplicate samples of the Stx positive strain grown at acidic conditions was also co-hybridized with genomic DNA from the Stx positive strain. Genomic DNA for each strain is technical replicates only.

2010-09-01 | E-GEOD-9418 | biostudies-arrayexpress

Apophysomyces trapeziformis strain:Apo-097

Project description:Apophysomyces trapeziformis strain:Apo-097 Genome sequencing

| PRJNA294463 | ENA

Apophysomyces ossiformis strain:NRRL A-21654

Project description:Apophysomyces ossiformis NRRL A-21654 Resequencing

| PRJNA499679 | ENA