Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Kerria lacca

ABSTRACT: Kerria lacca overview

PROVIDER: PRJNA242981 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1104126_1.fastq.gz	Fastqsanger.gz
	SRR1104126_2.fastq.gz	Fastqsanger.gz
	SRR1176880_1.fastq.gz	Fastqsanger.gz
	SRR1176880_2.fastq.gz	Fastqsanger.gz
	SRR1174805_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 34

Similar Datasets

Kerria lacca

Project description:Kerria lacca Raw sequence reads

| PRJNA896359 | ENA

Kerria lacca breed:kusmi

Project description:Kerria lacca ESTs

| PRJNA633001 | ENA

Kerria lacca isolate:The wild Kerria lacca was collected for this study

Project description:Kerria lacca isolate:The wild Kerria lacca was collected for this study Genome sequencing

| PRJNA922739 | ENA

Kerria lacca strain:Kusmi

Project description:Kerria lacca Transcriptome for Differential Gene expression_Lik0002_crawlers.

| PRJNA233434 | ENA

Kerria lacca strain:Kusmi

Project description:Kerria lacca Transcriptome for Differential Gene expression_Lik0014_fertilized females

| PRJNA239395 | ENA

Kerria lacca strain:Kusmi

Project description:Kerria lacca Transcriptome for Differential Gene expression_Lik0002_first instar larvae

| PRJNA239151 | ENA

Kerria lacca strain:Kusmi Rangeeni

Project description:Kerria lacca strain:Kusmi Rangeeni Transcriptome or Gene expression

| PRJNA244963 | ENA

Kerria lacca strain:Kusmi and rangeeni

Project description:Transcriptome sequence of Kerria lacca_wild type_crimson

| PRJNA242595 | ENA

Kerria japonica

Project description:Kerria japonica Raw sequence reads

| PRJNA543605 | ENA

Characterization of Potential Molecular Markers in Lac Insect <i>Kerria lacca</i> (Kerr) Responsible for Lac Production.

Project description:Kerria lacca (Kerr) is an important lac insect extensively used in industrial products in the form of resin, wax and dye. The scarce knowledge on molecular markers for K. lacca is a barrier in elucidating genetic information. Our study identified a total of 16,921 single-nucleotide polymorphisms (SNPs), and 6231 insertions and deletions (InDels)-of which, intergenic variation accounted for 41.22% and 56.30%, and exonic variation accounted for 39.10% and 17.46%, of SNPs and InDels, respectively. Observation of SNPs suggested that nucleotide substitution frequency and transition to transversion (Ts/Tv) ratio were highest at the late adult stage, 3.97, compared to at the other stages, with a genome-wide Ts/Tv ratio of 2.95. The maximum number of SNPs, 2853 (16.86%), was identified in chromosome 8, while the lowest, 1126 (6.65%), was identified in chromosome 7. The maximum and minimum numbers of InDels were located on chromosome 1 and 7, with 834 (13.38%) and 519 (8.33%), respectively. Annotation showed that highest numbers of exonic and intergenic SNPs were present at the late adult stage, whereas the maximum number of InDels was found at the larval stage. On the basis of gene function, 47 gene variations were screened and 23 candidate genes were identified in associations with lac production. Concluding work will enhance knowledge on molecular markers to facilitate an increase in lac production in K. lacca as well as other lac insects.

| S-EPMC9225327 | biostudies-literature

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data