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Laccaria bicolor S238N-H82

ABSTRACT: Laccaria bicolor S238N-H82 Genome sequencing. Assembly and annotation of improved draft.

PROVIDER: PRJNA243647 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR3750680_subreads.fastq.gz	Fastqsanger.gz
	SRR3750690.fastq.gz	Fastqsanger.gz
	SRR3750681_subreads.fastq.gz	Fastqsanger.gz
	SRR3750682_subreads.fastq.gz	Fastqsanger.gz
	SRR3750683_subreads.fastq.gz	Fastqsanger.gz

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Laccaria bicolor S238N-H82

Project description:Laccaria bicolor S238N-H82 WGS sequencing, assembly, and annotation

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Laccaria bicolor S238N-H82

Project description:Laccaria bicolor S238N-H82 PacBio Standard Draft genome sequencing

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Laccaria bicolor S238N-H82

Project description:Laccaria bicolor S238N-H82 genome sequencing

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Gene expression of Laccaria bicolor S238N free-living mycelium grown on different media

2012-03-01 | GSE35556 | GEO

Laccaria bicolor S238N gene expression in different tissues

Project description:The Transcriptome of different tissues and developmental stages of Laccaria bicolor S238N was analyzed. The array probes were designed from gene models taken from the Joint Genome institute Laccaria bicolor genome sequence version1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and to use this transcriptional information to confirm, to correct or to reject gene models. Another goal was to identify tissue-specific gene expression, e.g. mycorrhiza up-regulated transcripts or fruiting body up-regulated transcripts, or treatment specific gene expression for further detailed analyses. Keywords: Tissue comparison

2008-02-01 | GSE9784 | GEO

Gene expression of Laccaria bicolor S238N free-living mycelium grown on different media

Project description:Transcript profiles of Laccaria bicolor S238N mycelium on various media were analyzed. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, department of energy) Laccaria bicolor genome sequence version 1. One goal was to evaluate the effect of nutrient deprivation on the transcriptome of Laccaria bicolor. We performed 15 hybridizations (Roche-NimbleGen) with samples derived from Laccaria bicolor free-living mycelium grown on MMN medium, on MMN with a 10 times reduction in all major macro-elements, on MMN with a 10 times reduction in the quantity of glucose or onto agar medium supplemented with the same nutrients used to fertilize our mycorrhization experiments.

2012-03-01 | E-GEOD-35556 | biostudies-arrayexpress

Laccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development

2014-10-10 | GSE62225 | GEO

Laccaria-Douglas fir: A Timecourse of Mycorrhizal Root Tip Development

2014-10-10 | GSE62226 | GEO

Laccaria-Poplar: A Timecourse of Mycorrhizal Root Tip Development

Project description:This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with P. trichocarpa. Four time-points were analyzed, two weeks, four weeks , six weeks and twelve weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N We performed 16 hybridizations (NimbleGen) with samples derived from P.trichocarpa/L.bicolor mycorrhizal root tips. Samples were taken after 2,4,6 and 12 weeks of interaction (four biological replicates). These samples were compared to free-living mycelium from Laccaria bicolor S238N (three biological replicates). All samples were labeled with Cy3.

2014-10-10 | E-GEOD-62225 | biostudies-arrayexpress

Laccaria-Douglas fir: A Timecourse of Mycorrhizal Root Tip Development

Project description:This study characterizes the transcriptomic alterations of Laccaria bicolor S238N during interaction with Pseudotsuga menziesii. Three time-points were analyzed, two weeks, four weeks and six weeks after inoculation and compared to the transcriptome of free-living mycelium from Laccaria bicolor S238N. We performed 9 hybridizations (NimbleGen) with samples derived from Pseudotsuga menziesii /L.bicolor mycorrhizal root tips. Samples were taken after 2,4 and 6 weeks of interaction (three biological replicates). These samples were compared to free-living mycelium from Laccaria bicolor S238N (three biological replicates). All samples were labeled with Cy3.

2014-10-10 | E-GEOD-62226 | biostudies-arrayexpress

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