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Coprinopsis cinerea

ABSTRACT: PacBio RS sequencing of oxidized methylcytocines in Coprinopsis cinerea

PROVIDER: PRJNA245452 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1266150_consensus.fastq.gz	Fastqsanger.gz
	SRR1266160_consensus.fastq.gz	Fastqsanger.gz
	SRR1266170_consensus.fastq.gz	Fastqsanger.gz
	SRR1266180_consensus.fastq.gz	Fastqsanger.gz
	SRR1266190_consensus.fastq.gz	Fastqsanger.gz

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Project description:We analyzed oxidized 5-methylcytosine derivatives 5-hydroxymethylcytosine, 5-formylcytosine and 5-carboxylcytosine in nucleic acids of multicellular fungi Laccaria bicolor and Coprinopsis cinerea which have been used as models to study DNA methylation, developmental processes and symbiotic interactions. All three cytosine derivatives were detected in the genomes of both fungi, and importantly, we discovered 5carC in the RNA fractions, potentially including large non-coding, messenger RNAs and small RNA molecules, indicating gene regulatory functions of 5carC.

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Project description:We have recently shown that the coprophilous model mushroom Coprinopsis cinerea transcribes a broad array of genes encoding defense proteins in the vegetative mycelium and fruiting bodies that target bacterial competitors and animal predators challenging the respective tissues of this fungus. In addition, we have demonstrated in previous work that two nematotoxic defense proteins from Coprinopsis, CGL1 and CGL2, were induced in vegetative mycelium challenged with the predatory nematode Aphelenchus avenae; however, the specificity and broadness of this response remained unclear. In order to resolve these issues, we sequenced the poly(A)-positive transcriptome of vegetative mycelium of C. cinerea confronted with nematode predation, hyphal mechanical damage or bacterial co-culture.

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