Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Peptoclostridium litorale

ABSTRACT: [Clostridium] litorale overview

PROVIDER: PRJNA245764 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR4096534_1.fastq.gz	Fastqsanger.gz
	SRR4096534_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 3 of 3

Similar Datasets

Peptoclostridium litorale DSM 5388

Project description:Peptoclostridium litorale DSM 5388 Genome sequencing

| PRJNA245663 | ENA

Marinobacterium litorale

Project description:Marinobacterium litorale overview

| PRJNA185456 | ENA

Mycolicibacterium litorale

Project description:Mycobacterium litorale overview

| PRJNA375136 | ENA

Peptoclostridium litorale DSM 5388 strain:W6

Project description:Peptoclostridium litorale DSM 5388 strain:W6 Genome sequencing and assembly

| PRJNA240953 | ENA

Marinobacterium litorale DSM 23545

Project description:Marinobacterium litorale DSM 23545

| PRJNA185362 | ENA

Phylogenomic analysis of the family Peptostreptococcaceae (Clostridium cluster XI) and proposal for reclassification of Clostridium litorale (Fendrich et al. 1991) and Eubacterium acidaminophilum (Zindel et al. 1989) as Peptoclostridium litorale gen. nov. comb. nov. and Peptoclostridium acidaminophilum comb. nov.

Project description:In 1994, analyses of clostridial 16S rRNA gene sequences led to the assignment of 18 species to Clostridium cluster XI, separating them from Clostridium sensu stricto (Clostridium cluster I). Subsequently, most cluster XI species have been assigned to the family Peptostreptococcaceae with some species being reassigned to new genera. However, several misclassified Clostridium species remained, creating a taxonomic conundrum and confusion regarding their status. Here, we have re-examined the phylogeny of cluster XI species by comparing the 16S rRNA gene-based trees with protein- and genome-based trees, where available. The resulting phylogeny of the Peptostreptococcaceae was consistent with the recent proposals on creating seven new genera within this family. This analysis also revealed a tight clustering of Clostridium litorale and Eubacterium acidaminophilum. Based on these data, we propose reassigning these two organisms to the new genus Peptoclostridium as Peptoclostridium litorale gen. nov. comb. nov. (the type species of the genus) and Peptoclostridium acidaminophilum comb. nov., respectively. As correctly noted in the original publications, the genera Acetoanaerobium and Proteocatella also fall within cluster XI, and can be assigned to the Peptostreptococcaceae. Clostridium sticklandii, which falls within radiation of genus Acetoanaerobium, is proposed to be reclassified as Acetoanaerobium sticklandii comb. nov. The remaining misnamed members of the Peptostreptococcaceae, [Clostridium] hiranonis, [Clostridium] paradoxum and [Clostridium] thermoalcaliphilum, still remain to be properly classified.

| S-EPMC5244501 | biostudies-literature

Spiroplasma litorale strain:TN-1

Project description:Spiroplasma litorale TN-1 genome sequencing

| PRJNA253651 | ENA

Roseibium litorale strain:4C16A

Project description:Roseibium litorale strain:4C16A Genome sequencing and assembly

| PRJNA666240 | ENA

Flavobacterium litorale strain:WSW3-B6

Project description:Flavobacterium litorale strain:WSW3-B6 Genome sequencing

| PRJNA749485 | ENA

Cysteiniphilum litorale strain:DSM 101832

Project description:Cysteiniphilum litorale DSM 101832T, whole genome shotgun sequencing project