Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Sus scrofa

ABSTRACT: Characterization of Sus scrofa small RNA sequences present in both female and male gonads

PROVIDER: PRJNA246414 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1274763.fastq.gz	Fastqsanger.gz
	SRR1274764.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Characterization of Sus scrofa small RNA sequences present in both female and male gonads

Project description:We used deep sequencing to characterize 3 families of sRNAs (piRNAs, miRNAs, and tRFs) present in Sus scrofa gonads and focused on the sRNA fraction present in both male and female gonads. Of the sequences detected in the testes, 2.6% of piRNAs, 9% of miRNAs, and 10% of tRFs were also present in the ovaries. Notably, the majority of the shared piRNAs mapped to the introns of ribosomal RNAs and were derived from clustered loci. In addition, the most abundant miRNAs present in the ovaries and testes are conserved and are involved in many biological processes such as the regulation of homeobox genes, the control of cell proliferation, and carcinogenesis. Unexpectedly, we detected a novel sRNA type, the tRFs, which are 30–36-nt RNA fragments derived from tRNA molecules, in gonads Determination miRNA, piRNA and tRF expression in swine gonads

2014-07-27 | E-GEOD-57414 | biostudies-arrayexpress

Characterization of Sus scrofa small RNA sequences present in both female and male gonads

2014-07-27 | GSE57414 | GEO

Total RNA sequencing in multiple Sus Scrofa tissues reveals novel long non-coding RNAs functioning in skeletal muscle development

Project description:Long non-coding RNAs (lncRNAs) play important roles in diverse biological processes. However, the landscape of lncRNAs is largely unclear in Sus scrofa. Here we performed stranded RNA-seq on total RNA libraries from over 100 samples of Sus scrofa tissues. We identified 10,813 lncRNAs in Sus scrofa, of which 9,075 are novel. 57% of these lncRNAs were conserved in both human and mouse. These conserved lncRNAs tend to be more tissue-specific than pig-specific lncRNAs, and enriched in reproducible organs (i.e. testis and ovary). We characterized a group of lncRNAs potentially involved in the skeletal muscle development. One such lncRNA, a homolog of maternally expressed gene 3 (MEG3), was specifically expressed in the skeletal muscle at early developmental stage. And its expression pattern is conserved in pig and mouse. By over-expressing and knocking down MEG3 in mouse myoblast cell lines, we demonstrated its novel function as a myoblast proliferation suppressor.

2017-02-09 | GSE73763 | GEO

Sus scrofa scrofa

Project description:Sus scrofa scrofa Metagenome

| PRJNA899839 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Metagenome

| PRJNA521510 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Metagenome

| PRJNA596171 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Epigenomics

| PRJNA453452 | ENA

Sus scrofa scrofa

Project description:Sus scrofa scrofa Genome sequencing

| PRJNA176478 | ENA

Gene expression in non-perfused liver samples from endotoxemic Sus scrofa in context of deoxynivalenol contaminated diets

Project description:It has been proposed that chronic exposure to deoxynivalenol modulates hepatic gene expression and that sensivity to xenobiotics like deoxynivalenol is modulated by inflammation. We used microarrays to evaluate whether chronic deoxynivalenol exposure influences the hepatic gene expression of Sus scrofa in vivo and whether interaction between chronic deoxynivalenol exposure and systemic inflammation occur.

2021-07-19 | GSE171991 | GEO

Sus scrofa breed:Sus scrofa domesticus

Project description:Sus scrofa breed:Sus scrofa domesticus Genome sequencing

| PRJNA665974 | ENA