Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Ligilactobacillus salivarius str. Ren

ABSTRACT: Ligilactobacillus salivarius str. Ren Genome sequencing

PROVIDER: PRJNA247452 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR1287230.fastq.gz	Fastqsanger.gz
	SRR1299010.fastq.gz	Fastqsanger.gz
	SRR1299011.fastq.gz	Fastqsanger.gz
	SRR1290837.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 5

Similar Datasets

Ligilactobacillus salivarius str. Ren

Project description:Next generation sequencing based transcriptomic analysis of bile stress response in Lactobacillus salivarius Ren

| PRJNA281590 | ENA

RNA sequencing analysis of transcriptomics to study the growth of Lactobacillus salivarius Ren in raffinose

Project description:Purpose: To understand the metabolic mechanism of Lactobacillus salivarius Ren in raffinose Methods: Samples of Lactobacillus salivarius Ren grown in glucose and raffinose were sequenced on the Illumina Hiseq platform. Three independent biological replicates were generated, including a total of six samples. Results: Raw data were firstly processed through in-house perl scripts to generate clean data, and then clean date were mapped to the reference genome, getting about 8-10 million total mapped reads per sample.

2018-11-14 | GSE122483 | GEO

Next generation sequencing based transcriptomic analysis of bile stress response in Lactobacillus salivarius Ren

Project description:Lactobacillus salivarius is a member of the indigenous microbiota of the human gastrointestinal tract (GIT). Tolerance to bile stress is crucial for intestinal lactobacilli to survive in the GIT and to exert their beneficial actions. In this work, the Next-Generation Sequencing platform Illumina HiSeq 2000 was used to investigate the global response to bile in L. salivarius Ren, a potential probiotic strain isolated from a healthy centenarian. In the presence of 0.75 g liter-1 oxgall, the transcription of nearly 200 genes was detected to be associated with bile stress, including genes involved in carbohydrate and amino acid metabolism, cell envelope and fatty acid biogenesis, transcription and translation. This study improves our understanding on bile stress response in L. salivarius Ren.

2019-12-18 | GSE68033 | GEO

Ligilactobacillus salivarius

Project description:Ligilactobacillus salivarius Genome sequencing

| PRJNA1081956 | ENA

Ligilactobacillus salivarius

Project description:Ligilactobacillus salivarius Genome sequencing

| PRJNA858979 | ENA

Ligilactobacillus salivarius strain:AER36

Project description:Ligilactobacillus salivarius str. AER36 Genome sequencing and assembly

| PRJNA758415 | ENA

Ligilactobacillus salivarius strain:AER04

Project description:Ligilactobacillus salivarius str. AER04 Genome sequencing and assembly