Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Oryza sativa Japonica Group

ABSTRACT: Systemic suppression of the rice shoot metabolism upon root rot nematode infection

PROVIDER: PRJNA247782 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1288370_1.fastq.gz	Fastqsanger.gz
	SRR1288370_2.fastq.gz	Fastqsanger.gz
	SRR1288363_1.fastq.gz	Fastqsanger.gz
	SRR1288363_2.fastq.gz	Fastqsanger.gz
	SRR1288364_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 16

Similar Datasets

Systemic suppression of the rice shoot metabolism upon root rot nematode infection

Project description:Rice (Oryza sativa L.) is one of the most important staple foods in the world, feeding more than 50% of the human population. One of its most damaging pathogens, with major impact on rice yield, is the migratory root rot nematode Hirschmanniella oryzae. In comparison with the existing knowledge on the infection process of dicots by sedentary nematodes, far less is known about the interaction between monocot plants and nematodes or plant interactions with migratory nematode species. Therefore, to gain deeper insight into the systemic transcriptional changes in rice after migratory root rot nematode infection we have performed mRNA-Seq on the shoots of root rot nematode infected rice plants. The observations were independently validated using qRT-PCR and biochemical analyses. This research reveals significant modifications in the metabolism of the plant, with a general suppression of chlorophyll biosynthesis, and primary metabolic processes involved in plant growth . Differential expression analysis between controls rice shoots and shoots from root rot nematode (H. oryzae) infected rice at two time points.

2015-05-18 | E-GEOD-57707 | biostudies-arrayexpress

Systemic suppression of the rice shoot metabolism upon root rot nematode infection

2015-05-18 | GSE57707 | GEO

Oryza sativa Japonica Group transcriptome sequencing

Project description:Phosphate starvation/sufficient rice seedling, root or shoot Pi-starvation or Pi-sufficient stresses responsible rice genes, including previously unannotated genes were identified by Illumina mRNA-seq technology. 53 million reads from Pi-starvation or Pi-sufficient root or shoot tissues were uniquely mapped to the rice genome, and these included 40574 RAP3 transcripts in root and 39748 RAP3 transcripts in shoot. We compared our mRNA-seq expression data with that from Rice 44K oligomicroarray, and about 95.5% (root) and 95.4% (shoot) transcripts supported by the array were confirmed expression both by the array and by mRNA-seq, Moreover, 11888 (root) and 11098 (shoot) RAP genes which were not supported by array, were evidenced expression with mRNA-seq. Furthermore, we discovered 8590 (root) and 8193 (shoot) previously unannotated transcripts upon Pi-starvation and/or Pi-sufficient.

2012-01-06 | E-MTAB-4302 | biostudies-arrayexpress

Oryza sativa Japonica Group

Project description:Characterization of Gene Expression in Rice Shoot and Root

| PRJNA219160 | ENA

Oryza sativa Japonica Group

Project description:Expression data from shoot bases of rice seedling after gravistimulation

| PRJNA145121 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice shoot in response to macronutrient deficiency

| PRJNA278401 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice shoot in response to nitrogen deficiency condition

| PRJNA297879 | ENA

Oryza sativa Japonica Group

Project description:Gene expression profile of rice shoot in response to macronutrient excess conditions

| PRJNA297880 | ENA

Oryza sativa Japonica Group

Project description:Florigen-induced Transposon Silencing in the Shoot Apex during Floral Induction in Rice

| PRJDB2930 | ENA

Oryza sativa Japonica Group

Project description:Below ground attack by root knot nematode Meloidogyne graminicola predisposes rice to blast disease

| PRJNA352238 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data