Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Natrinema altunense strain:AJ2

ABSTRACT: Natrinema altunense AJ2 Genome sequencing

PROVIDER: PRJNA248700 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	JNCS01.dat.gz	Other
	JNCS01.fasta.gz	Fasta.gz
	JNCS01.master.dat	Other
	JNCS01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Natrinema altunense

Project description:Natrinema altunense overview

| PRJNA187131 | ENA

Natrinema altunense strain:4.1R

Project description:Natrinema altunense strain:4.1R Genome sequencing and assembly

| PRJNA511745 | ENA

Natrinema altunense strain:1A4-DGR

Project description:Natrinema altunense strain:1A4-DGR Genome sequencing and assembly

| PRJNA271196 | ENA

High quality draft genome sequence of an extremely halophilic archaeon <i>Natrinema altunense</i> strain AJ2<sup>T</sup>.

Project description:Natrinema altunense strain AJ2T, a halophilic archaeal strain, was isolated from a high-altitude (3884 m) salt lake in Xinjiang, China. This strain requires at least 1.7 M NaCl to grow and can grow anaerobically in the presence of nitrate. To understand the genetics underlying its extreme phenotype, we de novo assembled the entire genome sequence of AJ2T (=CGMCC 1.3731T=JCM 12890T). We assembled 3,774,135 bp of a total of 4.4 Mb genome in only 20 contigs and noted its high GC content (64.6%). Subsequently we predicted the gene content and generated genome annotation to identify the relationship between the epigenetic characteristics and genomic features. The genome sequence contains 52 tRNA genes, 3 rRNA genes and 4,462 protein-coding genes, 3792 assigned as functional or hypothetical proteins in nr database. This Whole Genome Shotgun project was deposited in DDBJ/EMBL/GenBank under the accession JNCS00000000. We performed a Bayesian (Maximum-Likelihood) phylogenetic analysis using 16S rRNA sequence and obtained its relationship to other strains in the Natrinema and Haloterrigena genera. We also confirmed the ANI value between every two species of Natrinema and Haloterrigena genera. In conclusion, our analysis furthered our understanding of the extreme-environment adapted strain AJ2T by characterizing its genome structure, gene content and phylogenetic placement. Our detailed case study will contribute to our overall understanding of why Natrinema strains can survive in such a high-altitude salt lake.

| S-EPMC5333441 | biostudies-literature

Natrinema zhouii strain:YPL30

Project description:Natrinema zhouii strain:YPL30 Genome sequencing

| PRJNA766189 | ENA

Natrinema halophilum strain:YPL8

Project description:Natrinema halophilum strain:YPL8 Genome sequencing

| PRJNA766187 | ENA

Natrinema marinum strain:DT87

Project description:Natrinema marinum strain:DT87 Genome sequencing

| PRJNA854279 | ENA

Natrinema longum strain:ABH32

Project description:Natrinema longum strain:ABH32 Genome sequencing