Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Mycobacterium

ABSTRACT: Mycobacterium Genome sequencing

PROVIDER: PRJNA251692 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1791700_1.fastq.gz	Fastqsanger.gz
	SRR1791700_2.fastq.gz	Fastqsanger.gz
	SRR1791710_1.fastq.gz	Fastqsanger.gz
	SRR1791710_2.fastq.gz	Fastqsanger.gz
	SRR1791720_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 3135

Similar Datasets

Identification of microproteins in Mycobacterium smegmatis by proteogenomics

Project description:We employed a proteogenomics workflow to identify microproteins encoded by small Open Reading Frames (ORFs) in the genome of Mycobacterium smegmatis strain mc²155.

2022-04-21 | PXD025604 | JPOST Repository

Comparative transcriptomics of Mycobacterium bovis and Mycobacterium marinum

Project description:Related surrogate species are often used to study the molecular basis of pathogenicity of a pathogen on the basis of a shared set of biological features generally attributable to a shared core genome consisting of orthologous genes. An important and understudied aspect, however, is the extent to which regulatory features affecting the expression of such shared genes are present in both species. Here we report on an analysis of whole transcriptome maps for an important member of the TB complex Mycobacterium bovis and a closely related model organism for studying mycobacterial pathogenicity Mycobacterium marinum.

2014-09-08 | GSE51881 | GEO

Mycobacterium

Project description:Mycobacterium Genome sequencing

| PRJNA507083 | ENA

Comparative genomic hybridizations of Mycobacterium avium isolates obtained from multiple host species

Project description:A comparative genomic approach was used to identify large sequence polymorphisms among Mycobacterium avium isolates obtained from a variety of host species. DNA microarrays were used as a platform for comparing mycobacteria field isolates with the sequenced bovine isolate Mycobacterium avium subsp. paratuberculosis (Map) K10. ORFs were classified as present or divergent based on the relative fluorescent intensities of the experimental samples compared to Map K10 DNA. Map isolates cultured from cattle, bison, sheep, goat, avian, and human sources were hybridized to the Map microarray. Three large deletions were observed in the genomes of four Map isolates obtained from sheep and four clusters of ORFs homologous to sequences in the Mycobacterium avium subsp. avium (Maa) 104 genome were identified as being present in these isolates. One of these clusters encodes glycopeptidolipid biosynthesis enzymes. One of the Map sheep isolates had a genome profile similar to a group of Mycobacterium avium subsp. silvaticum (Mas) isolates which included four independent laboratory stocks of the organism traditionally identified as Maa strain 18. Genome diversity in Map appears to be mostly restricted to large sequence polymorphisms that are often associated with mobile genetic elements. Keywords: Comparative genomic hybridization

2007-04-27 | GSE7622 | GEO

RNA-sequencing of hypoxic Mycobacterium tuberculosis treated with C10

Project description:We sought to identify which genes were dysregulated in hypoxic Mycobacterium tuberculosis upon treatment with C10. We cultured Mycobacterium tuberculosis in an air-tight vessel for 2 weeks in the presence of either DMSO or 50 μM C10, and used RNA-sequencing to compare transcriptional profiles.

2019-05-31 | GSE129830 | GEO

Comparative transcriptomics of Mycobacterium bovis and Mycobacterium marinum

2014-09-08 | E-GEOD-51881 | biostudies-arrayexpress

ChIP-seq analysis of RNA polymerase and sigma A distribution in Mycobacterium smegmatis

Project description:We describe RNA polymerase and sigma A distribution in the genome of Mycobacterium smegmatis by ChIP-seq. The experiment was performed in exponential and stationary phase of growth.

2024-02-09 | E-MTAB-12349 | biostudies-arrayexpress

Expression Analysis of WR99210-treated Mycobacterium tuberculosis H37Rv

Project description:Investigation of whole genome gene expression level changes in Mycobacterium tuberculosis treated with the DHFR inhibitor WR99210, compared to untreated cells. The antimycobacterial properties of WR99210 are further described in Gerum, A., Ulmer, J., Jacobus, D., Jensen, N., Sherman, D., and C. Sibley. 2002. Novel Saccharomyces cerevisiae screen identifies WR99210 analogues that inhibit Mycobacterium tuberculosis dihydrofolate reductase. Antimicrob Agents Chemother 46(11):3362-3369 [PMID:12384337]

2012-09-18 | GSE40917 | GEO

Mycobacterium

Project description:Mycobacterium Genome sequencing and assembly

| PRJNA311193 | ENA

Mycobacterium

Project description:Mycobacterium Genome sequencing and assembly

| PRJNA507082 | ENA