Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Thiocapsa

ABSTRACT: single-cell Thiocapsa Genome sequencing

PROVIDER: PRJNA252899 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
		Other
	SRR16219620_1.fastq.gz	Fastqsanger.gz
	SRR16219620_2.fastq.gz	Fastqsanger.gz
	SRR16219621_1.fastq.gz	Fastqsanger.gz
	SRR16219621_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Thiocapsa marina

Project description:Thiocapsa marina overview

| PRJNA63067 | ENA

Thiocapsa marina 5811

Project description:Thiocapsa marina 5811 genome sequencing project

| PRJNA63055 | ENA

Thiocapsa bogorovii strain:BBS

Project description:Thiocapsa bogorovii strain:BBS Genome sequencing

| PRJNA787410 | ENA

Thiocapsa roseopersicina strain:DSM 217 | isolate:DSM 217

Project description:Thiocapsa roseopersicina DSM 217 genome sequencing

| PRJNA329750 | ENA

Thiocapsa rosea strain:DSM 235 | isolate:DSM 235

Project description:Thiocapsa rosea DSM 235 genome sequencing

| PRJNA332050 | ENA

A multicenter translational biomarker phase II trial of regorafenib in patients with non-resectable pretreated colorectal cancer.

Project description:Primary objectives: The primary objective is to investigate circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS). Primary endpoints: circulating tumor DNA (ctDNA) via deep sequencing for mutation detection and by whole genome sequencing for copy number analyses before start (baseline) with regorafenib and at defined time points during administration of regorafenib for treatment efficacy in colorectal cancer patients in terms of overall survival (OS).

| 2533916 | ecrin-mdr-crc

Lagunillo de Cardenillas metagenomic datasets obtained during a Thiocapsa bloom

Project description:Lagunillo de Cardenillas metagenomic datasets obtained from various seasons and depths under the dominance (bloom) of purple sulfur bacteria (Thiocapsa-like)

| PRJNA745587 | ENA

Project description:Thiocapsa roseopersicina DSM 217

| PRJEB16554 | ENA

Single Cell triple omics sequencing reveals genetic and epigenetic heterogeneity in hepatocellular carcinoma

Project description:Single cell genome, DNA methylome, and transcriptome sequencing has been achieved separately. However, to analyze the regulation of RNA expression by genetic and epigenetic factors within an individual cell, it is necessary to analyze these omics simultaneously from the same single cell. Here we developed a single cell triple omics sequencing technique- scTrio-seq, to analyze the genome, DNA methylome, and transcriptome concurrently of a mammalian cell. 6 single human HepG2 cell line cells were sequenced using the newly developed scTrio-seq, other 2 HepG2 cells were sequenced using scRNA-seq and other 2 HepG2 cells were sequenced using scRRBS as technique control. 6 single mouse embryonic stem cells (mESCs) were sequenced using the newly developted scTrio-seq. Meanwhile, two scRNA-seq and two scRRBS were also completed using two mESCs separately. 26 single cells from hepatocellular carcinoma were sequenced using scTrio-seq to analyze the regulation relations between three omics of cancer cells.

2016-03-01 | E-GEOD-65364 | biostudies-arrayexpress

Localization of hydrogenase in Thiocapsa roseopersicina photosynthetic membrane.

Project description:The photosynthetic cell membrane is impermeable to the oxidized redox dyes Methyl Viologen and Benzyl Viologen, whereas the reduced forms easily penetrate into the cells. By exploiting this permeability difference, the orientation of the membrane-bound hydrogenase has been determined.

| S-EPMC1158099 | biostudies-other

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data