Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pantoea rodasii strain:LMG 26273

ABSTRACT: Pantoea rodasii strain:LMG 26273 Genome sequencing and assembly

PROVIDER: PRJNA252990 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	MLFP01.dat.gz	Other
	MLFP01.fasta.gz	Fasta.gz
	MLFP01.master.dat	Other
	MLFP01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Pantoea deleyi strain:LMG 24200

Project description:Pantoea deleyi strain:LMG 24200 Genome sequencing and assembly

| PRJNA252987 | ENA

Pantoea rwandensis strain:LMG 26275

Project description:Pantoea rwandensis strain:LMG 26275 Genome sequencing and assembly

| PRJNA252996 | ENA

Pantoea anthophila strain:LMG 2558

Project description:Pantoea anthophila strain:LMG 2558 Genome sequencing and assembly

| PRJNA549748 | ENA

Pantoea eucalypti strain:LMG 24197

Project description:Pantoea eucalypti strain:LMG 24197 Genome sequencing and assembly

| PRJNA549756 | ENA

[Pantoea] beijingensis strain:LMG 27579

Project description:[Pantoea] beijingensis strain:LMG 27579 Genome sequencing and assembly

| PRJNA244966 | ENA

Pantoea brenneri strain:LMG 5343

Project description:Pantoea brenneri strain:LMG 5343 Genome sequencing and assembly

| PRJNA252984 | ENA

Pantoea eucrina strain:LMG 5346

Project description:Pantoea eucrina strain:LMG 5346 Genome sequencing and assembly

| PRJNA252988 | ENA

Pantoea septica strain:LMG 5345

Project description:Pantoea septica strain:LMG 5345 Genome sequencing and assembly

| PRJNA252991 | ENA

Pantoea allii strain:LMG 24248

Project description:Pantoea allii strain:LMG 24248 Genome sequencing and assembly

| PRJNA252983 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data