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Root metagenome

ABSTRACT: Arbuscular mycorrhizal fungi Targeted Locus (Loci)

PROVIDER: PRJNA253276 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1503520.fastq.gz	Fastqsanger.gz
	SRR1503530.fastq.gz	Fastqsanger.gz
	SRR1503540.fastq.gz	Fastqsanger.gz
	SRR1503550.fastq.gz	Fastqsanger.gz
	SRR1503521.fastq.gz	Fastqsanger.gz

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Project description:Arbuscular mycorrhiza (AM) interactions between plants and Glomeromycota fungi primarily support phosphate aquisition of most terrestrial plant species. To unravel gene expression during early stages of Medicago truncatula root colonization by AM fungi, we used genome-wide transcriptome profiling based on mycorrhizal root fragments enriched for early fungal infection stages. We used Medicago GeneChips to detail the global programme of gene expression in response to early stages of colonization by arbuscular mycorrhizal fungi and identified genes differentially expressed during these early stages.

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Project description:Most vascular flowering plants have the ability to form mutualistic associations with soil fungi from the Glomeromycota. The resulting symbiosis is called an arbuscular mycorrhiza and they are widespread in terrestrial ecosystems throughout the world. Significant alteration occurs at physiological and molecular levels in both symbionts. To gain a better understanding of the AM symbiosis, we use a 16000 feature oligonucleotide based array to examine gene expression in an arbuscular mycorrhizal symbioses, M. truncatula/Gigaspora gigantea. Keywords: Medicago truncatula, Mycorrhizal, Gigaspora gigantea, microarray profiling

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