Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Melampsora larici-populina 98AG31

ABSTRACT: Melampsora larici-populina 98AG31 Genome sequencing

PROVIDER: PRJNA258675 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR4063847_1.fastq.gz	Fastqsanger.gz
	SRR4063847_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

Early infection of poplar leaves by the rust pathogen Melampsora larici-populina

Project description:The identification of early-expressed pathogen effectors and early-modulated host functions is currently a major goal to understand the molecular basis of biotrophic lifestyle. Melampsora larici-populina isolates 98AG31 and 93ID6, respectively virulent and avirulent on the hybrid P. trichocarpa x P. deltoides poplar cultivar M-bM-^@M-^XBeauprM-CM-)M-bM-^@M-^Y were used in this study. Inoculations were performed on 5 cm2 leaf disks. The following conditions were used for oligoarrays: Incompatible 18, 21 and 24 hpi, Compatible 18, 24 and 48hpi. One aim of this study was to compare RNA-Seq and hybridization-based approaches, therefore the cDNA templates were used for whole-genome poplar oligoarrays and 454-pyrosequencing. We performed 6 hybridizations (Nimblegen) with samples derived from incompatible (18, 21 and 24hpi) and compatible (18, 24 and 48hpi) interactions of Melampsora larici-populina with P. trichocarpa x P. deltoides poplar cultivar M-bM-^@M-^XBeauprM-CM-)M-bM-^@M-^Y leaves. All samples were labeled with Cy3.

2012-09-01 | E-GEOD-34802 | biostudies-arrayexpress

Melampsora larici-populina gene expression in different tissues and developmental stages

Project description:The transcriptome of Melampsora-larici-populina was analysed in urediniospores, germlings and during poplar leaf infection. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, Department of Energy) Melampsora larici-populina genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and development stages. Another goal was to monitor gene expression profiles during poplar leaf infection and to highlight tissue-specific transcripts, e.g. in planta up-regulated transcripts for further analyses.

2011-06-10 | GSE21624 | GEO

Melampsora larici-populina gene expression in different tissues and development stages

Project description:The transcriptome of Melampsora-larici-populina was analysed in urediniospores, germlings and infected Poplar leaves. The array probes were designed from gene models taken from the Joint Genome Institute (JGI, Department of Energy) Melampsora larici-populina genome sequence version 1. One aim of this study was to verify the expression of the automatically annotated gene models in various tissues and development stages. Another goal was to monitor gene expression at different developmental stages and to highlight tissue-specific transcripts, e.g. in planta up-regulated transcripts for further analyses.

2011-04-30 | GSE23097 | GEO

Early infection of poplar leaves by the rust pathogen Melampsora larici-populina

2012-09-01 | GSE34802 | GEO

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A030 genome sequencing

| PRJNA403590 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A133 genome sequencing

| PRJNA403596 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A130 genome sequencing

| PRJNA403601 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A046 genome sequencing

| PRJNA403618 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A112 genome sequencing

| PRJNA403627 | ENA

Melampsora larici-populina 98AG31

Project description:Melampsora larici-populina 98AG31 S1 mapping population resequencing - A121 genome sequencing

| PRJNA403637 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data