Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Gut metagenome

ABSTRACT: Drometary camel Metagenome

PROVIDER: PRJNA260105 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1564301_1.fastq.gz	Fastqsanger.gz
	SRR1564301_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 2 of 2

Similar Datasets

gut metagenome

Project description:Camel Metagenome

| PRJNA269325 | ENA

gut metagenome

Project description:Camel metagenome

| PRJNA271203 | ENA

gut metagenome

Project description:Camel gut Metagenome

| PRJNA271202 | ENA

Defining the Secrebiome: the expressed secretome of the gut microbiome and its role in obese Mexican children

Project description:high throughput sequencing of the metagenome of mexican children

2020-03-16 | GSE143207 | GEO

gut metagenome

Project description:Microbial diversity of camel calf faeces

| PRJNA269512 | ENA

Gut metagenome/FINRISK 2002 (Salosensaari et al. Nature Comms 2021)

Project description:The main goal of the project is the study the associations between the gut metagenome and human health. The dataset contains data for n=7211 FINRISK 2002 participants who underwent fecal sampling. Demultiplexed shallow shotgun metagenomic sequences were quality filtered and adapter trimmed using Atropos (Didion et al., 2017), and human filtered using Bowtie2 (Langmead and Salzberg, 2012).

| EGAS00001005020 | EGA

Gut metagenome/FR 2002 (Salosensaari et al. Nature Comms 2021)

| EGAS00001005038 | EGA

gut metagenome

Project description:Studies on microbial diversity of camel calf faeces

| PRJNA269321 | ENA

Relating human gut metagenome and metaproteome

Project description:Gut microbiome research is rapidly moving towards the functional characterization of the microbiota by means of shotgun meta-omics. Here, we selected a cohort of healthy subjects from an indigenous and monitored Sardinian population to analyze their gut microbiota using both shotgun metagenomics and shotgun metaproteomics. We found a considerable divergence between genetic potential and functional activity of the human healthy gut microbiota, in spite of a quite comparable taxonomic structure revealed by the two approaches. Investigation of inter-individual variability of taxonomic features revealed Bacteroides and Akkermansia as remarkably conserved and variable in abundance within the population, respectively. Firmicutes-driven butyrogenesis (mainly due to Faecalibacterium spp.) was shown to be the functional activity with the higher expression rate and the lower inter-individual variability in the study cohort, highlighting the key importance of the biosynthesis of this microbial by-product for the gut homeostasis. The taxon-specific contribution to functional activities and metabolic tasks was also examined, giving insights into the peculiar role of several gut microbiota members in carbohydrate metabolism (including polysaccharide degradation, glycan transport, glycolysis and short-chain fatty acid production). In conclusion, our results provide useful indications regarding the main functions actively exerted by the gut microbiota members of a healthy human cohort, and support metaproteomics as a valuable approach to investigate the functional role of the gut microbiota in health and disease.

2017-07-19 | PXD005780 | Pride

gut metagenome

Project description:Analysis of rumen microbial community of the desert camel using RNA-seq

| PRJNA386838 | ENA