Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine metagenome

ABSTRACT: Transplant and re-transplant microcosms of Baltic Proper and Bothnian Sea bacterioplankton Targeted Locus (Loci)

PROVIDER: PRJNA260662 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1600330_1.fastq.gz	Fastqsanger.gz
	SRR1600330_2.fastq.gz	Fastqsanger.gz
	SRR1600340_1.fastq.gz	Fastqsanger.gz
	SRR1600340_2.fastq.gz	Fastqsanger.gz
	SRR1600350_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 64

Similar Datasets

marine metagenome

Project description:16S rRNA sequences of bacterioplankton spatial distributions in the Baltic Proper

| PRJNA260664 | ENA

unidentified marine bacterioplankton

Project description:Coral Reef Bacterioplankton Targeted Locus (Loci)

| PRJNA168990 | ENA

transplant

Project description:Baltic Sea transplant experiment

| PRJEB14197 | ENA

Hydrodynamic conditions shape ammonia-oxidizer communities in the central Baltic Sea water column

Project description:The Baltic Sea is one of the largest brackish water bodies in the world. Redoxclines that form between oxic and anoxic layers in the deepest sub-basins are a semi-permanent character of the pelagic Baltic Sea. The microbially mediated nitrogen removal processes in these redoxclines have been recognized as important ecosystem service that removes large proportion of the nitrogen load originating from the drainage basin. However, nitrification, which links mineralization of organic nitrogen and nitrogen removal processes, has remained poorly understood. To gain better understanding of the nitrogen cycling in the Baltic Sea, we analyzed the assemblage of ammonia oxidizing bacteria and archaea in the central Baltic Sea using functional gene microarrays and measured the biogeochemical properties along with potential nitrification rates. Overall, the ammonia oxidizer communities in the Baltic Sea redoxcline were very evenly distributed. However, the communities were clearly different between the eastern and western Gotland Basin and the correlations between different components of the ammonia oxidizer assemblages and environmental variables suggest ecological basis for the community composition. The more even community ammonia oxidizer composition in the eastern Gotland Basin may be related to the constantly oscillating redoxcline that does not allow domination of single archetype. The oscillating redoxcline also creates long depth range of optimal nitrification conditions. The rate measurements suggest that nitrification in the central Baltic Sea is able to produce all nitrate required by denitrification occurring below the nitrification zone.

2013-08-24 | GSE50164 | GEO

marine metagenome

Project description:Baltic Sea high-frequency temporal study 2012 at the Linnaeus Microbial Observatory Targeted Locus (Loci)

| PRJNA260661 | ENA

Spatial variation in transcript and protein abundance of Atlantic salmon during feeding migration in the Baltic Sea

Project description:In this study, transcriptomics was used to investigate Atlantic salmon (Salmo salar) sampled from three different field locations within Baltic Sea (Baltic Main Basin (CBS), Gulf of Finland (GoF) and Bothnian Sea (BS)) during marine migration. RNA labeling, hybridizations, and scanning were performed by the Finnish Microarray and Sequencing Centre in Turku Centre for Biotechnology.

2015-01-23 | E-MTAB-3041 | biostudies-arrayexpress

marine metagenome

Project description:Ross Sea, Antarctica Targeted Locus (Loci)

| PRJNA373938 | ENA

marine metagenome

Project description:Ross Sea, Antarctica Targeted Locus (Loci)

| PRJNA264429 | ENA

marine metagenome

Project description:Sea water sample Targeted Locus (Loci)

| PRJNA201086 | ENA

Diverse transcriptome response to salinity change in cod subpopulations from the Baltic Sea

Project description:The Atlantic cod (Gadus morhua L.) is one of the most important species in the Baltic Sea with high ecological and economical value. To explore the differences in adaptation to salinity between Baltic cod subpopulation: western (Kiel Bight) and eastern (Gdańsk Bay) samples were analyzed through genome-wide oligonucleotide microarray.

2022-02-02 | GSE195878 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data