Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Rhodopseudomonas palustris

ABSTRACT: Rhodopseudomonas palustris Genome sequencing

PROVIDER: PRJNA261062 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1791630_1.fastq.gz	Fastqsanger.gz
	SRR1791630_2.fastq.gz	Fastqsanger.gz
	SRR1791640_1.fastq.gz	Fastqsanger.gz
	SRR1791640_2.fastq.gz	Fastqsanger.gz
	SRR1791650_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 97

Similar Datasets

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

Project description:To address the question of how photosynthetic bacterium Rhodopseudomonas palustris metabolize lignin derived compound p-coumarate, transcriptomics and quantitative proteomics were combined to characterize gene expression profiles at both the mRNA level and protein level in Rhodopseudomonas palustris grown with succinate, benzoate, and p-coumarate as the carbon source. Keywords: Comparison of transcriptome profiles

2008-05-07 | GSE6221 | GEO

Characterization of anaerobic catabolism of p-coumarate in Rhodopseudomonas palustris

2008-05-07 | E-GEOD-6221 | biostudies-arrayexpress

Phosphoproteomic analysis of Rhodopseudomonas palustris

Project description:This study is to compare the phosphoproteome of Rhodopseudomonas palustris under photoheterotrophic and chemoheterotrophic states

2012-12-12 | PXD000025 | Pride

Gene expression patterns of a Rhodopseudomonas palustris ΔregSR strain under photoheterotrophic growth conditions

Project description:The redox-sensing two-component signal transduction system, RegSR, in Rhodopseudomonas palustris has been shown to regulate an uptake hydrogenase in response to varying cellular redox states; however, its role is still largely undefined. Here, we used RNA sequencing to compare gene expression patterns in wild type R. palustris strain CGA010 to a ΔregSR derivative, CGA2023, under varying metabolic conditions. Growth conditions were chosen to utilize the different metabolic capabilites of R. palustris and, thus, present a variety of different redox challenges to the cell.

2021-07-31 | GSE150608 | GEO

Anaerobic degradation of syringic acid by an adapted strain of Rhodopseudomonas palustris

Project description:Rhodopseudomonas palustris strain SA008.1.07 can use syringic acid as sole organic carbon source anaerobically. Grew all anaerobically in various carbon sources: syringic acid, succinate, and p-hydroxybenzoic acid.

2019-11-25 | GSE135630 | GEO

How post-translational modification of nitrogenase is circumvented in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively

Project description:Characterization of post-translational modification of nitrogenase in Rhodopseudomonas palustris strains that produce hydrogen gas constitutively.

2012-03-15 | GSE32292 | GEO

Rhodopseudomonas palustris proteome grown under aerobic and anaerobic conditions

Project description:Rhodopseudomonas palustris proteome grown under three conditions to investigate the expression of essential genes.

2022-03-01 | PXD010001 | Pride

Functional genomic analysis of three nitrogenase isozymes in the photosynthetic bacterium Rhodopseudomonas palustris

Project description:To address the question of how photosynthetic bacterium Rhodopseudomonas palustris differentially regulates gene expression of three nitrogenase isozymes (Mo, V, and Fe nitrogenases), we constructed Mo strain (Mo nitrogenase only strain), V strain (V nitrogenase only strain), and Fe strain (Fe nitrogenase only strain), and analyzed the whole genome transcriptome profiles of each mutant and wild-type cells grown under nitrogen-fixing conditions. Keywords: Genetic modification

2005-11-10 | GSE3030 | GEO

Rhodopseudomonas palustris strain:SA008.1.07

Project description:Rhodopseudomonas palustris SA008.1.07 genome sequencing

| PRJNA346422 | ENA

Rhodopseudomonas palustris

Project description:Rhodopseudomonas palustris Raw sequence reads

| PRJNA1191171 | ENA