Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Pseudomonas coronafaciens strain:LMG 5060

ABSTRACT: Pseudomonas coronafaciens strain:LMG 5060 Genome sequencing and assembly

PROVIDER: PRJNA264904 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	JSED01.dat.gz	Other
	JSED01.fasta.gz	Fasta.gz
	JSED01.master.dat	Other
	JSED01.dat.gz	Other

Items per page:

1 - 4 of 4

Similar Datasets

Pseudomonas coronafaciens pv. coronafaciens strain:BY2023

Project description:Pseudomonas coronafaciens pv. coronafaciens strain:BY2023 Genome sequencing

| PRJNA1178904 | ENA

Pseudomonas coronafaciens pv. coronafaciens strain:B19001

Project description:Pseudomonas coronafaciens pv. coronafaciens strain:B19001 Genome sequencing

| PRJNA591322 | ENA

Pseudomonas coronafaciens

Project description:Pseudomonas coronafaciens overview

| PRJNA39457 | ENA

Pseudomonas coronafaciens pv. oryzae strain:36_1

Project description:Pseudomonas coronafaciens pv. oryzae strain:36_1 Genome sequencing and assembly

| PRJNA287070 | ENA

Pseudomonas coronafaciens pv. garcae strain:ICMP 4323

Project description:Pseudomonas coronafaciens pv. garcae strain:ICMP 4323 Genome sequencing and assembly

| PRJNA286835 | ENA

Transcriptome profiling reveals the EanI/R quorum sensing regulon in Pantoea ananatis LMG 2665T

Project description:Background: Pantoea ananatis LMG 2665T synthesizes and utilizes acyl homoserine lactones (AHLs) for signaling. In this strain, short chain AHLs (C4 to C8) are produced by the EanI/R quorum sensing (QS) system that is involved in pathogenicity and biofilm formation. The complete set of genes regulated by the EanI/R system in P. ananatis LMG 2665T is still not fully known. In the present study, RNA-seq was used to analyze the transcriptome profiles controlled by the EanI/R system in this strain by comparing the wild type strain and its QS mutant 2665T ean∆I/R during lag and log stages. The RNA seq data was validated by RT qPCR. Results: The results showed that the EanI/R regulon in P. ananatis LMG 2665T comprised 144 genes, constituting 3.3% of the whole transcriptome under the experimental conditions in this study. The majority of genes regulated by the EanI/R system included genes for flagella assembly, bacterial chemotaxis, pyruvate metabolism, two component system, metabolic pathways, microbial metabolism and biosynthesis of secondary metabolites. Conclusions: This is the first study to identify the EanI/R QS regulon in P. ananatis LMG 2665T. Functional analysis of genes regulated the EanI/R system in LMG 2665T could help unveil genes that play a vital role in pathogenesis and survival strategies of this pathogen.

2018-10-31 | GSE87207 | GEO

Pseudomonas coronafaciens pv. porri strain:LMG 28495

Project description:Pseudomonas syringae pv. porri LMG 28495 Genome sequencing

| PRJNA266479 | ENA

Pseudomonas coronafaciens pv. porri strain:LMG 28496

Project description:Pseudomonas syringae pv. porri LMG 28496 Genome sequencing

| PRJNA266491 | ENA

Pseudomonas coronafaciens strain:X-1 | isolate:X-1

Project description:Pseudomonas coronafaciens strain:X-1 | isolate:X-1 Genome sequencing

| PRJNA613155 | ENA

Pseudomonas kuykendallii strain:LMG 26346

Project description:Pseudomonas kuykendallii strain:LMG 26346 Genome sequencing and assembly