Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Batrachochytrium dendrobatidis strain:Section Line

ABSTRACT: Batrachochytrium dendrobatidis Genome resequencing

PROVIDER: PRJNA265883 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1639274_1.fastq.gz	Fastqsanger.gz
	SRR1639274_2.fastq.gz	Fastqsanger.gz
	SRR1636746.fastq.gz	Fastqsanger.gz
	SRR1636746_1.fastq.gz	Fastqsanger.gz
	SRR1636746_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 11

Similar Datasets

Common frog (Rana temporaria) transcriptomes following Exposure to Ranavirus and Batrachochytrium dendrobatidis

Project description:This experiment examined the transcriptional response of juvenile amphibian hosts (common frog, Rana temporaria) to two important amphibian pathogens: Batrachochytrium dendrobatidis (Bd) and Ranavirus. Common frogs are non-model organisms which do not have a reference genome.

2015-07-10 | E-MTAB-3632 | biostudies-arrayexpress

Batrachochytrium dendrobatidis JAM81

Project description:Batrachochytrium dendrobatidis JAM81 genome sequencing project

| PRJNA41157 | ENA

Transcriptomic Analysis of the Serratia marcescens Response to Batrachochytrium dendrobatidis

Project description:Global amphibian declines and extinction events are currently occurring at an unprecedented rate. While various factors are influencing these declines, one factor that is readily identifiable is disease. Specifically, the fungal pathogen Batrachochytrium dendrobatidis is thought to play a major role in amphibian declines in tropical and neotropical regions of the globe. While the effects of this chytrid fungus have been shown to be devastating, certain individuals and relict populations have shown resistance. This resistance has been attributed in part to the cutaneous microbiome. Many identified bacterial species that make up the microbiome have shown anti-B. dendrobatidis activity in vitro. One bacteria that is commonly associated as being a member of the amphibian microbiome across amphibian species and shows such anti-B. dendrobatidis activity is Serratia marcescens. Here, we look at transcriptomic shifts in gene expression of S. marcescens (high homology to strain WW4) in response to both live and heat-killed B. dendrobatidis.

2016-07-11 | GSE84057 | GEO

Batrachochytrium dendrobatidis strain:CLFT071

Project description:Batrachochytrium dendrobatidis CLFT071 Genome sequencing and assembly

| PRJNA913953 | ENA

Batrachochytrium dendrobatidis strain:CLFT067

Project description:Batrachochytrium dendrobatidis CLFT067 Genome sequencing and assembly

| PRJNA987741 | ENA

Batrachochytrium dendrobatidis strain:CLFT044

Project description:Batrachochytrium dendrobatidis CLFT044 Genome sequencing and assembly

| PRJNA821523 | ENA

Batrachochytrium dendrobatidis strain:RTP6

Project description:Batrachochytrium dendrobatidis strain:RTP6 Genome sequencing and assembly

| PRJNA483086 | ENA

Batrachochytrium dendrobatidis

Project description:DNAseq of Batrachochytrium dendrobatidis (Farrer et al PNAS 2011)

| PRJNA222638 | ENA

Batrachochytrium dendrobatidis

Project description:DNAseq of Batrachochytrium dendrobatidis (Farrer et al PLoS Genet 2013)

| PRJNA174849 | ENA

Batrachochytrium dendrobatidis strain:multiple strains

Project description:Multi-isolate project for Batrachochytrium dendrobatidis

| PRJNA63423 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data