Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Hot springs metagenome

ABSTRACT: Extreme environments Genome sequencing

PROVIDER: PRJNA267761 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1656881.fastq.gz	Fastqsanger.gz
	SRR1656942.fastq.gz	Fastqsanger.gz
	SRR1656883.fastq.gz	Fastqsanger.gz
	SRR1656905.fastq.gz	Fastqsanger.gz
	SRR1656896.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

hot springs metagenome

Project description:Extreme Metagenomes Metagenomic assembly

| PRJNA695063 | ENA

hot springs metagenome

Project description:Viral metagenomes generated to explore viral diversity in low biomass environments

| PRJNA273640 | ENA

Investigation of Microbial Diversity in Geothermal Hot Springs in Unkeshwar, India, Based on 16S rRNA Amplicon Metagenome Sequencing.

Project description:Microbial diversity in geothermal waters of the Unkeshwar hot springs in Maharashtra, India, was studied using 16S rRNA amplicon metagenomic sequencing. Taxonomic analysis revealed the presence of Bacteroidetes, Proteobacteria, Cyanobacteria, Actinobacteria, Archeae, and OD1 phyla. Metabolic function prediction analysis indicated a battery of biological information systems indicating rich and novel microbial diversity, with potential biotechnological applications in this niche.

| S-EPMC4767922 | biostudies-literature

Nonmarine crenarchaeol in Nevada hot springs.

Project description:Glycerol dialkyl glycerol tetraethers (GDGTs) are core membrane lipids of the Crenarchaeota. The structurally unusual GDGT crenarchaeol has been proposed as a taxonomically specific biomarker for the marine planktonic group I archaea. It is found ubiquitously in the marine water column and in sediments. In this work, samples of microbial community biomass were obtained from several alkaline and neutral-pH hot springs in Nevada, United States. Lipid extracts of these samples were analyzed by high-performance liquid chromatography-mass spectrometry and by gas chromatography-mass spectrometry. Each sample contained GDGTs, and among these compounds was crenarchaeol. The distribution of archaeal lipids in Nevada hot springs did not appear to correlate with temperature, as has been observed in the marine environment. Instead, a significant correlation with the concentration of bicarbonate was observed. Archaeal DNA was analyzed by denaturing gradient gel electrophoresis. All samples contained 16S rRNA gene sequences which were more strongly related to thermophilic crenarchaeota than to Cenarchaeum symbiosum, a marine nonthermophilic crenarchaeon. The occurrence of crenarchaeol in environments containing sequences affiliated with thermophilic crenarchaeota suggests a wide phenotypic distribution of this compound. The results also indicate that crenarchaeol can no longer be considered an exclusive biomarker for marine species.

| S-EPMC520871 | biostudies-literature

hot springs metagenome

Project description:hot springs metagenome Genome sequencing

| PRJNA975086 | ENA

hot springs metagenome

Project description:hot springs metagenome Genome sequencing

| PRJNA397838 | ENA

hot springs metagenome

Project description:Tengchong hot springs Genome sequencing

| PRJNA319657 | ENA

hot springs metagenome

Project description:Hot Spring Genome sequencing and assembly