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Hebeloma cylindrosporum

ABSTRACT: Gene expression changes in Hebeloma cylindrosporum- Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living mycelium

PROVIDER: PRJNA269292 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1693520.fastq.gz	Fastqsanger.gz
	SRR1693521.fastq.gz	Fastqsanger.gz
	SRR1693522.fastq.gz	Fastqsanger.gz
	SRR1693517.fastq.gz	Fastqsanger.gz
	SRR1693518.fastq.gz	Fastqsanger.gz

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Gene expression changes in Hebeloma cylindrosporum- Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living mycelium

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Gene expression changes in Hebeloma cylindrosporum- Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Hebeloma cylindrosporum ectomycorrhizal root tips compared to free-living mycelium . Ectomycorrhizal root tips and control mycelium were harvested after 3 weeks and used for RNA extraction. Reads of 150 bp were generated and aligned to Hebeloma cylindrosporum transcripts (http://genome.jgi-psf.org/Hebcy2) using CLC Genomics Workbench 7. mRNA profiles from Hebeloma cylindrosporum ectomycorrhizal root tips and free-living mycelium were generated by Illumina HiSeq2000 sequencing (150bp). Three biological replicates were sequenced for mycorrhizal and mycelium samples.

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Project description:Gene expression changes in greenhouse Hebeloma cylindrosporum-Pinus pinaster ectomycorrhizal root tips compared to Hebeloma cylindrosporum free-living mycelium

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Project description:Illumina HiSeq2000 technology was used to generate mRNA profiles from Hebeloma cylindrosporum pre-infectious stages (2 and 4 days) compared to control mycelium. Pre-infectious and control mycelia were harvested after 2 and 4 days and used for RNA extraction. Reads of 150 bp were generated and aligned to Hebeloma cylindrosporum reference transcripts (http://genome.jgi-psf.org/Hebcy2) using CLC Genomics Workbench 8.5.1.

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