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Piloderma croceum

ABSTRACT: Gene expression changes in Piloderma croceum-Quercus robur ectomycorrhizal roots compared to Piloderma croceum free-living mycelium

PROVIDER: PRJNA269500 | ENA |

REPOSITORIES: ENA

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Dataset's files

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			Action	DRS
	SRR1695540_1.fastq.gz	Fastqsanger.gz
	SRR1695540_2.fastq.gz	Fastqsanger.gz
	SRR1695541_1.fastq.gz	Fastqsanger.gz
	SRR1695541_2.fastq.gz	Fastqsanger.gz
	SRR1695542_1.fastq.gz	Fastqsanger.gz

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Gene expression changes in Piloderma croceum-Quercus robur ectomycorrhizal roots compared to Piloderma croceum free-living mycelium

Project description:Illumina HiSeq technology was used to generate mRNA profiles from Piloderma croceum ectomycorrhizal roots compared to free-living mycelium . Mycorrhizal roots were harvested after 8 weeks, pooled and used for RNA extraction. Reads of 2X100bp were generated and aligned to Piloderma croceum (http://genome.jgi-psf.org/Pilcr1/Pilcr1.home.html) using CLC Genomics Workbench 6. mRNA profiles from Piloderma croceum ectomycorrhizal roots and free-living mycelium were generated by paired-end (2x100bp) Illumina HiSeq2000 sequencing. Three biological replicates were sequenced for mycorrhizal and mycelium samples.

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