Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Fusarium graminearum PH-1

ABSTRACT: Transcriptional responses of Fusarium graminearum when exposed to bacterial MAMPs

PROVIDER: PRJNA273653 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1772870_1.fastq.gz	Fastqsanger.gz
	SRR1772870_2.fastq.gz	Fastqsanger.gz
	SRR1772880_1.fastq.gz	Fastqsanger.gz
	SRR1772880_2.fastq.gz	Fastqsanger.gz
	SRR1772890_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 108

Similar Datasets

Transcriptional responses of Fusarium graminearum when exposed to bacterial MAMPs

Project description:The plant fungal pathogen Fusarium graminearum which has part of its life cycle in the soil generally comes in contact with bacteria. Therefore the fungus was used as fungal model to test fungal responses to bacterial presence and ascertain the presence of an innate immune system in fungi through a transcriptomics study. Bacterial presence was established by exposing young fungal cultures to the well characterised MAMPs (Microbe Associated Molecular Pattern) such as Flagellin (FLG), Lipooligosacharides (LOS) and Peptidoglycans (PGN) and water was used as the control. The results showed that the fungus reacts to the presence of MAMPs within hours and that the 3 MAMPs up-regulated a set of common genes. These significantly up-regulated common genes can be classified into categories such as energy generation, amino acid metabolism, iron uptake, secondary metabolism and transporters related to secondary metabolism. Analysis of the transcriptional reponse from FLG showed that the MAMP which was obtained comercially was blended with sucrose and this was later confirmed by the commercial provider.

2016-06-02 | GSE65311 | GEO

Knockout of MITOGEN-ACTIVATED PROTEIN KINASE 3 causes barley root resistance against Fusarium graminearum

Project description:Mitogen-activated protein kinases (MAPKs) are fundamental components of the plant immune system. MAPK cascades are activated by microbial elicitors and effectors, such as microbe-associated molecular patterns (MAMPs) and damage-associated molecular patterns (DAMPs). The activation of MAPKs plays essential roles in early and late responses associated with plant defense and innate immunity. In the present experiment, we investigated the role of HvMPK3 in the resistance of barley (Hordeum vulgare) against Fusarium graminearum. The proteomes of TALEN-induced MPK3 knock-out lines of barley (HvMPK3 KO) were compared with wild types 24 h after the treatment with F. graminearum. Results explain the resistance of HvMPK KO lines to the pathogen.

2022-09-07 | PXD029964 | Pride

The transcriptomic responses of maize stalks infected with Fusarium graminearum PH-1 and Δcfem1

Project description:This experiment is to assess the changes of maize genes expression in response to Fusarium graminearum stains wild-type PH-1 and Δcfem1 mutant. F. graminearum is the major casual fungal pathogen of Gibberella stalk rot on maize.

2022-11-12 | GSE199300 | GEO

RNA-seq analyses of Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutant under toxoflavin condition

Project description:Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and are often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated a toxoflavin-sensitive mutant from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strain, ∆GzZC190, under toxoflavin condition.

2020-01-15 | GSE93640 | GEO

Transcriptome analyses of toxoflavin-dependent genes in Fusarium graminearum wild-type GZ03639 and toxoflavin-sensitive mutants

Project description:Bacterial pathogen Burkholderia glumae and fungal pathogen Fusarium graminearum cause similar disease symptoms and often co-isolated from rice heads, inferring interactions between the two pathogens. F. graminearum is resistant to the bacterial toxin toxoflavin, a strong anti-microbial activity, produced by B. glumae. We isolated toxoflavin-sensitive mutants from transcription factor deletion mutant library of F. graminearum. To understand genome-wide transcriptional profiling, we performed RNA-seq analyses of F. graminearum wild-type strain GZ03639 and toxoflavin-sensitive mutant strains (∆GzZC190, ∆GzC2H008, ∆GzbZIP005) under toxoflavin condition.

2018-02-16 | GSE104623 | GEO

Fusarium graminearum

Project description:Transcriptional responses of Fusarium graminearum to plant cell wall substrates

| PRJNA140855 | ENA

RNA-seq analysis of Fusarium graminearum Z-3639 in heat stress

Project description:Fusarium graminearum (teleomorph Gibberella zeae) is a prominent pathogen that infects major cereal crops, such as wheat, barley, and maize. To dissect cellular responses toward heat stress in the plant pathogenic fungus F. graminearum, we compared transcriptomes of the fungal cultures incubated in normal temperature condition (25 ÂºC) and in high temperature condition (37 ÂºC) for 15 min. 6 samples examined: 24 h-old mycelia from complete medium (CM) of Fusarium graminearum wild-type Z-3639 were incubated in normal temperature condition (25 ÂºC) and in high temperature condition (37 ÂºC) for 15 min.

2016-05-13 | E-GEOD-78885 | biostudies-arrayexpress

Fusarium graminearum in vitro secretome

Project description:The plant pathogenic fungus Fusarium graminearum (Fgr) creates economic and health risks in cereals agriculture. Fgr causes head blight (or scab) of wheat and stalk rot of corn, reducing yield, degrading grain quality and polluting downstream food products with mycotoxins. Fungal plant pathogens must secrete proteases to access nutrition and to breakdown the structural protein component of the plant cell wall. Research into the proteolytic activity of Fgr is hindered by the complex nature of the suite of proteases secreted. We used a systems biology approach comprising genome analysis, transcriptomics and label-free quantitative proteomics to characterise the peptidases deployed by Fgr during growth. A combined analysis of published microarray transcriptome datasets revealed seven transcriptional groupings of peptidases based on in vitro growth, in planta growth, and sporulation behaviours. An orbitrap MS/MS proteomics technique defined the extracellular proteases secreted by Fusarium graminearum.

2015-10-06 | PXD002786 | Pride

Fusarium graminearum PH-1

Project description:Fusarium graminearum PH-1 Genome sequencing

| PRJNA782099 | ENA

Fusarium graminearum PH-1

Project description:Fusarium graminearum PH-1 Raw sequence reads

| PRJNA295929 | ENA