Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Coral metagenome

ABSTRACT: Microbial metagenomics in the skeleton of Isopora palifera Metagenome

PROVIDER: PRJNA274309 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1791580.fastq.gz	Fastqsanger.gz
	SRR1791581.fastq.gz	Fastqsanger.gz
	SRR1791582.fastq.gz	Fastqsanger.gz
	SRR1791583.fastq.gz	Fastqsanger.gz
	SRR1791584.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

coral metagenome

Project description:Coral Isopora Palifera Skeleton Metagenomes

| PRJNA477682 | ENA

coral metagenome

Project description:Microbial metagenomics in the tissues and the skeleton of Isopora palifera Metagenome

| PRJNA188395 | ENA

Project description:Isopora palifera skeleton 16S microbial Community

| PRJNA481408 | ENA

Isopora palifera

Project description:Isopora palifera overview

| PRJNA1143610 | ENA

Coral Isopora Palifera Endolithic Culture Metagenomes

Project description:Coral Isopora Palifera Endolithic Culture Metagenomes Raw sequence reads

| PRJNA595808 | ENA

Project description:Isopora palifera endolithic bacteria community

| PRJNA686201 | ENA

jaIsoPali11

Project description:Isopora palifera genome assembly, jaIsoPali11

| PRJEB78607 | ENA

The preceding root system drives the rhizosphere microbiome

Project description:Background: The soil environment is responsible for sustaining most terrestrial plant life on earth, yet we know surprisingly little about the important functions carried out by diverse microbial communities in soil. Soil microbes that inhabit the channels of decaying root systems, the detritusphere, are likely to be essential for plant growth and health, as these channels are the preferred locations of new root growth. Understanding the microbial metagenome of the detritusphere and how it responds to agricultural management such as crop rotations and soil tillage will be vital for improving global food production. Methods: The rhizosphere soils of wheat and chickpea growing under + and - decaying root were collected for metagenomics sequencing. A gene catalogue was established by de novo assembling metagenomic sequencing. Genes abundance was compared between bulk soil and rhizosphere soils under different treatments. Conclusions: The study describes the diversity and functional capacity of a high-quality soil microbial metagenome. The results demonstrate the contribution of the microbiome from decaying root in determining the metagenome of developing root systems, which is fundamental to plant growth, since roots preferentially inhabit previous root channels. Modifications in root microbial function through soil management, can ultimately govern plant health, productivity and food security.

2020-03-06 | GSE146427 | GEO

Project description:Genomic view of archaeal and bacterial diversity in skeleton of coral Porites lutea and Isopora palifera

| PRJNA857095 | ENA

jaIsoPali11 alternate haplotype

Project description:Isopora palifera genome assembly, jaIsoPali11, alternate haplotype

| PRJEB78608 | ENA