Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Breviolum psygmophilum

ABSTRACT: Symbiodinium psygmophilum transcriptome assembly

PROVIDER: PRJNA274854 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1793324_1.fastq.gz	Fastqsanger.gz
	SRR1793324_2.fastq.gz	Fastqsanger.gz
	SRR1793325_1.fastq.gz	Fastqsanger.gz
	SRR1793325_2.fastq.gz	Fastqsanger.gz
	SRR1793326_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 8

Similar Datasets

Breviolum minutum

Project description:Symbiodinium minutum transcriptome assembly

| PRJNA274852 | ENA

Breviolum psygmophilum

Project description:Breviolum psygmophilum overview

| PRJNA1076288 | ENA

Breviolum minutum Mf 1.05b.01

Project description:Transcriptome sequencing of Symbiodinium minutum

| PRJDB2108 | ENA

Chromosome-scale assembly of the Symbiodinium microadriaticum genome

Project description:Hi-C assisted genome assembly of the Symbiodinium microadriaticum genome

2021-02-12 | GSE152150 | GEO

Breviolum minutum Mf 1.05b.01

Project description:The whole genome sequence of a dinoflagellate, Symbiodinium minutum

| PRJDB732 | ENA

Breviolum minutum Mf 1.05b.01

Project description:Analysis of transcription start sites of in Symbiodinium minutum

| PRJDB3092 | ENA

Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata

Project description:This SuperSeries is composed of the following subset Series: GSE12809: Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata (part 1) GSE15253: Symbiodinium clade content drives host transcriptome more than thermal stress in the coral Montastraea faveolata (part 2) Refer to individual Series

2010-05-18 | E-GEOD-15262 | biostudies-arrayexpress

The host transcriptome remains unaltered during the establishment of coral-algal symbioses

Project description:Coral reefs are based on the symbiotic relationship between corals and photosynthetic dinoflagellates of the genus Symbiodinium. We followed gene expression of coral larvae of Acropora palmata and Montastraea faveolata after exposure to Symbiodinium strains that differed in their ability to establish symbioses. We show that the coral host transcriptome remains almost unchanged during infection by competent symbionts, but is massively altered by symbionts that fail to establish symbioses. Our data suggest that successful coral-algal symbioses depend mainly on the symbionts' ability to enter the host in a stealth manner rather than a more active response from the coral host. Acropora palmata Samples: Three biological replicates of pooled larvae from each species and condition (i.e. untreated control, inoculated with competent Symbiodinium strain, inoculated with incompetent Symbiodinium strain) for both time points were hybridized against a pooled reference. Pooled references were constructed by combining equal amounts of aRNA from all control samples from A. palmata. References were labeled with Cy3, samples with Cy5. Montastraea faveolata Samples: Three biological replicates of pooled larvae from each species and condition (i.e. untreated control, inoculated with competent Symbiodinium strain, inoculated with incompetent Symbiodinium strain) for both time points were hybridized against a pooled reference. Pooled references were constructed by combining equal amounts of aRNA from all control samples from M. faveolata. References were labeled with Cy3, samples with Cy5. Symbiodinium sp. CassKB8: competent strain Symbiodinium sp. EL1: incompetent strain Symbiodinium sp. Mf1.05b: competent strain

2010-06-20 | E-GEOD-14923 | biostudies-arrayexpress

Evidence for a role of viruses in the thermal sensitivity of coral photosymbionts

Project description:Symbiodinium, the dinoflagellate photosymbiont of corals, is posited to become more susceptible to viral infections when heat-stressed. To investigate this hypothesis, we mined transcriptome data of a thermo-sensitive and a thermo-tolerant type C1 Symbiodinium population at ambient (27°C) and elevated (32°C) temperatures. We uncovered hundreds of transcripts from nucleocytoplasmic large double-stranded DNA viruses (NCLDVs) and the genome of a novel positive-sense single-stranded RNA virus (+ssRNAV). In the transcriptome of the thermo-sensitive population only, +ssRNAV transcripts had remarkable expression levels in the top 0.03% of all transcripts at 27°C, but at 32°C, expression levels of +ssRNAV transcripts decreased while expression levels of antiviral transcripts increased. In both transcriptomes, expression of NCLDV transcripts increased at 32°C, but thermal-induction of NCLDV transcripts involved in DNA manipulation was restricted to the thermo-sensitive population. Our findings reveal that viruses infecting Symbiodinium are affected by heat stress and may contribute to Symbiodinium thermal sensitivity.

2016-09-28 | GSE77911 | GEO

Symbiodinium pseudominutum strain:CRV2015-pseudominutum

Project description:Symbiodinium pseudominutum transcriptome assembly

| PRJNA274855 | ENA