Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Piper nigrum

ABSTRACT: High throughput sequencing of small RNAs from black pepper (Piper nigrum L.)

PROVIDER: PRJNA275003 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1795500.fastq.gz	Fastqsanger.gz
	SRR1795501.fastq.gz	Fastqsanger.gz
	SRR1795502.fastq.gz	Fastqsanger.gz
	SRR1795499.fastq.gz	Fastqsanger.gz

Items per page:

1 - 4 of 4

Similar Datasets

High throughput sequencing of small RNAs from black pepper (Piper nigrum L.)

Project description:In this study, we used the illumina high throughput sequencing approach (Sequencing-By-Synthesis, or SBS) to develop the sequence resource of black pepper. To identify micro RNAs functioning in stress response of the black pepper plant, small RNA libraries were prepared from the leaf and root of Phytophthora capsici infected plants, leaves from drought stressed and control plants.

2017-08-24 | GSE65782 | GEO

Black pepper proteome - Transcriptome- Assisted Label-Free Quantitative Proteomics Analysis Reveals Novel Insights into Piper nigrum-Phytophthora capsici Phytopathosystem

Project description:In this study, we have evaluated the proteomic changes that occur in Piper nigrum L.(black pepper) after infection by the pathogen Phytophthora capsici. We report novel leaf proteins from black pepper identified by an integrated transcriptome-assisted label-free quantitative proteomics pipeline. Several previously described methods were used to create this data set. Detached leaves were inoculated with either mock treatment, or the oomycete pathogen and small tissue samples only around the site of inoculation were collected for protein sample preparations. In order to quantify protein abundance in the samples being compared, we used a label free method of spiking samples with a known ratio of pre-digested peptide samples to normalize endogenous protein abundance in the MS detection. Our study attempts to explain the basal immune components of black pepper when challenged with P. capsici.

2016-07-07 | PXD003887 | Pride

Piper nigrum

Project description:Piper nigrum Organism overview

| PRJNA83907 | ENA

Piper nigrum

Project description:Piper nigrum Clone ends

| PRJNA825712 | ENA

Piper nigrum

Project description:Piper nigrum Genome sequencing

| PRJNA1033833 | ENA

Piper nigrum

Project description:Piper nigrum Raw sequence reads

| PRJNA276311 | ENA

Piper nigrum cultivar:Panniyur-1

Project description:Long coding RNAs from Piper nigrum

| PRJNA825342 | ENA

Piper nigrum

Project description:Piper nigrum Genome sequencing and assembly

| PRJNA529758 | ENA

Drosophila gene expression in response to the botanical insecticide Piper nigrum

Project description:This experiment was used to determine the effect of a botanical insecticide upon gene expression profiles in Drosophila melanogaster. Adult female Drosophila (oregon-R strain) were treated with an ethylacetate extract of Piper nigrum (Piperaceae) seeds formulated in 99% ethanol. Treatment was topical, using a Potter's tower to administer a total of 2 mL of a 0.9mg/mL concentration. Control treatment was identical except flies were treated with 99% ethanol as a solvent control. Gene expression was studied four hours post-treatment. Keywords: insecticide response, stress-response

2006-01-24 | GSE3032 | GEO

Transcriptomics – assisted proteome profiling of black pepper (Piper nigrum L.)

Project description:This study was designed to evaluate the proteome profiles of Piper nigrum when challenged with three different biotic stress. We have utilized a transcriptome-assisted protein identification pipeline coupled with a BLAST2GO annotation.

2022-03-02 | PXD004008 | Pride

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data