Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Soil metagenome

ABSTRACT: Bacterial composition of tropical earthworm casts

PROVIDER: PRJNA275070 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR1797630.fastq.gz	Fastqsanger.gz
	SRR1797641.fastq.gz	Fastqsanger.gz
	SRR1797661.fastq.gz	Fastqsanger.gz
	SRR1797663.fastq.gz	Fastqsanger.gz
	SRR1797683.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 10

Similar Datasets

Metagenome sequencing of feces of mouse treated D-galactose or not

Project description:D-galactose orally intake ameliorate DNCB-induced atopic dermatitis by modulating microbiota composition and quorum sensing. The increased abundance of bacteroidetes and decreased abundance of firmicutes was confirmed. By D-galactose treatment, Bacteroides population was increased and prevotella, ruminococcus was decreased which is related to atopic dermatitis.

2022-04-29 | E-MTAB-11632 | biostudies-arrayexpress

soil COI metagenome

Project description:Drivers of tropical soil invertebrate community composition and richness across tropical secondary forests using DNA metasystematics

| PRJNA542652 | ENA

Project description:Metagenomic sequencing of ageing casts from earthworm Aporrectodea caliginosa

| PRJNA495452 | ENA

soil metagenome

Project description:Composition and diversity of soil fungi in Dipterocarpaceae-dominated seasonal tropical forests in Thailand

| PRJDB6268 | ENA

metagenome earthworm&soil

Project description:metagenome earthworm&soil Metagenome

| PRJNA884013 | ENA

soil metagenome

Project description:Soil fungal and bacterial community composition Raw sequence reads

| PRJNA976969 | ENA

soil metagenome

Project description:CHARACTERIZATION OF BACTERIAL COMMUNITY STRUCTURE IN A HYDROCARBON-CONTAMINATED TROPICAL AFRICAN SOIL

| PRJDB1542 | ENA

Comparative transcriptomics of Burkholderia pseudomallei from soil media and infected host

Project description:Burkholderia pseudomallei can adapt to and thrive in a variety of environments, including soil and water, and also can infect different hosts, including humans, leading to the tropical disease melioidosis. Modulation of gene and protein expression is one of this pathogen's adaptive survival mechanisms, which could lead to changes in the bacteria's cell membrane, metabolism, and virulence. To better understand bacterial adaptation and host-pathogen interactions, this study compared the expression profiles of B. pseudomallei from infected mice to B. pseudomallei cultivated in soil extract media. B. pseudomallei in vivo was created by infecting mice through the intraperitoneal route and harvesting the spleens on day 5 post infection. Total RNA was isolated and sequenced from the harvested spleen. Sequence reads were mapped to the B. pseudomallei UKMD286 strain genome sequence.

2022-07-22 | E-MTAB-11200 | biostudies-arrayexpress

soil metagenome

Project description:Soil bacterial community composition with artificial root exudates application Metagenome

| PRJNA394773 | ENA

Geochip data of soil microbial community of biomes from three termperature zones

Project description:Here, we applied a microarray-based metagenomics technology termed GeoChip 5.0 to examined functional gene structure of microbes in three biomes, including boreal, temperate and tropical area.

2024-05-10 | GSE172195 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data