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Physcomitrium patens

ABSTRACT: Genome-wide transcriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens

PROVIDER: PRJNA277025 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR1824310.fastq.gz	Fastqsanger.gz
	SRR1824320.fastq.gz	Fastqsanger.gz
	SRR1824311.fastq.gz	Fastqsanger.gz
	SRR1824312.fastq.gz	Fastqsanger.gz
	SRR1824313.fastq.gz	Fastqsanger.gz

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Physcomitrium patens

Project description:Genome-wide small RNAtranscriptome analysis during dehydration and recovery in gametophores of Physcomitrella patens

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Genome-wide DNA methylation maps during rehydration in gametophores of Physcomitrella patens.

Project description:To examine the P. patens genome-wide methylation landscape and assess its functional significance during dehydration, we generated the first single-base resolution genome methylation maps for P. patens gametophores of hydrated (HD), moderate dehydrated (MDH), severe dehydrated (SDH), partially recovered (PRE) and fully recovered (FRE). The overall density of methyl-cytosine was not broadly altered by dehydration and recovery. There is, however, a small increase in intensity both for the whole genome and regionally during MDH and FRE. Only 225 differentially expressed genes were located in differentially methylated regions (DMRs) during the dehydration-recovery cycle. The finding may provide an important clue for exploring molecular mechanisms and the regulation of desiccation tolerance at the whole-genome level.

2018-02-22 | GSE66485 | GEO

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