Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Embryophyta

ABSTRACT: Samples collected from multiple fern species. raw sequence reads

PROVIDER: PRJNA281136 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2103680_1.fastq.gz	Fastqsanger.gz
	SRR2103680_2.fastq.gz	Fastqsanger.gz
	SRR2103690_1.fastq.gz	Fastqsanger.gz
	SRR2103690_2.fastq.gz	Fastqsanger.gz
	SRR2103700_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 138

Similar Datasets

Morus alba Raw protein sequence reads

Project description:Morus alba L. Raw protein sequence reads and sequence

2024-02-08 | PXD049451 |

Exploring the gene expression profile upon FXR1 knockdown in H358 cells using RNA-seq

Project description:We performed the RNA-seq in control samples and FXR1 knockdown samples, and compared the gene expression profiles to explore the effect of FXR1 knockdown on gene expression. The study was performed in H358 cells. Doxycycline inducible shRNA3 (sh3) was used to knockdown FXR1. Control shRNA (ctrl) samples were used to get rid of the effect of Doxycycline treatment. Both the Doxycycline treament for 3 days (D3) and 5 days (D5) samples were collected. Each sample has three repeats (rep 1, rep 2, and rep 3). The mRNA profiles were generated by deep sequencing using Illumina.Sequenced reads were trimmed for adaptor sequence, then mapped to hg19 whole genome using STAR v2.5.3 with parameters --bamRemoveDuplicatesType UniqueIdentical --outSAMmultNmax 1. Raw reads and Reads Per Kilobase per Megabase of library size (RPKM) were calculated using HOMER (PMID: 20513432). Differential gene expression was analyzed using R package DESeq2 using the raw reads.

2017-10-04 | GSE101754 | GEO

Quantitative profiling of differentially expressed miRNAs in siCTL- and siOASL-transfected HUVECs

Project description:Purpose: The goal of this study is to compare endothelial small RNA transcriptome to identify the target of OASL under basal or stimulated conditions by utilizing miRNA-seq. Methods: Endothelial miRNA profilies of siCTL or siOASL transfected HUVECs were generated by illumina sequencing method, in duplicate. After sequencing, the raw sequence reads are filtered based on quality. The adapter sequences are also trimmed off the raw sequence reads. rRNA removed reads are sequentially aligned to reference genome (GRCh38) and miRNA prediction is performed by miRDeep2. Results: We identified known miRNA in species (miRDeep2) in the HUVECs transfected with siCTL or siOASL. The expression profile of mature miRNA is used to analyze differentially expressed miRNA(DE miRNA). Conclusions: Our study represents the first analysis of endothelial miRNA profiles affected by OASL knockdown with biologic replicates.

2022-09-06 | GSE186354 | GEO

Multiple host plant species

Project description:multiple fungal species Raw sequence reads

| PRJNA625559 | ENA

Vibrio species

Project description:Multiple Vibrio species Raw sequence reads

| PRJNA699735 | ENA

RNA-Seq data of Vitis vinifera cv. Furmint berry samples (Tokaj wine region) exposed to noble rot

Project description:White grape (Vitis vinifera cv. Furmint) berry samples subjected to natural noble rot were collected in a vineyard in Mád, Hungary (Tokaj wine region). Raw data include grapevine and Botrytis cinerea sequence reads.

2021-11-25 | E-MTAB-11205 | biostudies-arrayexpress

Project description:samples collected from environment Raw sequence reads

| PRJNA1083199 | ENA

sludge samples collected from MCOR Raw sequence reads

Project description:sludge samples collected from MCOR Raw sequence reads Raw sequence reads

| PRJNA727695 | ENA

sludge samples collected from MCOR

Project description:sludge samples collected from MCOR Raw sequence reads

| PRJNA725363 | ENA

Project description:sludge samples collected from SBR Raw sequence reads

| PRJNA836021 | ENA