Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Verticillium nonalfalfae

ABSTRACT: Comparative genomics of Verticillium albo.atrum (V. nonalfalfae) strains infecting hops

PROVIDER: PRJNA283258 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	PDEZ01.dat.gz	Other
	PDEZ01.fasta.gz	Fasta.gz
	PDEZ01.master.dat	Other
	SRR2012820_1.fastq.gz	Fastqsanger.gz
	SRR2012820_2.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 36

Similar Datasets

Verticillium nonalfalfae

Project description:Verticillium nonalfalfae overview

| PRJNA311975 | ENA

Verticillium nonalfalfae

Project description:Verticillium nonalfalfae Genome sequencing and assembly

| PRJNA507541 | ENA

Verticillium nonalfalfae

Project description:Verticillium nonalfalfae Genome sequencing and assembly

| PRJNA611914 | ENA

Verticillium nonalfalfae strain:VnAa140/NRRL 66861

Project description:Verticillium nonalfalfae strain VnAa140/NRRL 66861 Genome sequencing and assembly

| PRJNA493511 | ENA

Project description:Identification and Characterization of Verticillium nonalfalfae-responsive microRNAs in hops (Humulus lupulus L.)

| PRJNA665133 | ENA

Verticillium dahliae

Project description:Global Verticillium dahliae Genomics Research: Verticilli-Omics

| PRJNA642346 | ENA

Hop - Verticillium RNA-seq

Project description:Time-series RNA-seq of hop (Humulus lupulus L.) infected with Verticillium nonalfalfae

| PRJEB14243 | ENA

Complete mitochondrial genome of the Verticillium-wilt causing plant pathogen Verticillium nonalfalfae.

Project description:Verticillium nonalfalfae is a fungal plant pathogen that causes wilt disease by colonizing the vascular tissues of host plants. The disease induced by hop isolates of V. nonalfalfae manifests in two different forms, ranging from mild symptoms to complete plant dieback, caused by mild and lethal pathotypes, respectively. Pathogenicity variations between the causal strains have been attributed to differences in genomic sequences and perhaps also to differences in their mitochondrial genomes. We used data from our recent Illumina NGS-based project of genome sequencing V. nonalfalfae to study the mitochondrial genomes of its different strains. The aim of the research was to prepare a V. nonalfalfae reference mitochondrial genome and to determine its phylogenetic placement in the fungal kingdom. The resulting 26,139 bp circular DNA molecule contains a full complement of the 14 "standard" fungal mitochondrial protein-coding genes of the electron transport chain and ATP synthase subunits, together with a small rRNA subunit, a large rRNA subunit, which contains ribosomal protein S3 encoded within a type IA-intron and 26 tRNAs. Phylogenetic analysis of this mitochondrial genome placed it in the Verticillium spp. lineage in the Glomerellales group, which is also supported by previous phylogenetic studies based on nuclear markers. The clustering with the closely related Verticillium dahliae mitochondrial genome showed a very conserved synteny and a high sequence similarity. Two distinguishing mitochondrial genome features were also found-a potential long non-coding RNA (orf414) contained only in the Verticillium spp. of the fungal kingdom, and a specific fragment length polymorphism observed only in V. dahliae and V. nubilum of all the Verticillium spp., thus showing potential as a species specific biomarker.

| S-EPMC4739603 | biostudies-literature

The transcriptional landscape of Nicotiana benthamiana and Verticillium dahliae interaction

Project description:Verticillium dahliae is a soil-borne fungus with a broad host range, including the model plants Nicotiana benthamiana and Arabidopsis thaliana. The plant immunity can be activated by Vd-derived patterns while V. dahliae secreted effectors. We report here the RNAseq analyses of samples from N. benthamiana infected by V. dahliae strains 592 and 171 at different time points. The data showed dynamic expression patterns of genes not only from plant defense signaling but also plant developmental signaling.

2023-07-13 | GSE236729 | GEO

Verticillium

Project description:Verticillium species Assembly

| PRJNA392396 | ENA