Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Marine sediment metagenome

ABSTRACT: Assessing the effects of salmon farming seabed enrichment using bacterial community diversity and high throughput sequencing

PROVIDER: PRJNA283428 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2027620_1.fastq.gz	Fastqsanger.gz
	SRR2027620_2.fastq.gz	Fastqsanger.gz
	SRR2027660_1.fastq.gz	Fastqsanger.gz
	SRR2027660_2.fastq.gz	Fastqsanger.gz
	SRR2027720_1.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 54

Similar Datasets

Survey functional genes in Arctic marine sediment communities

Project description:The objective was to identify functional genes encoded by Fungi and fungal-like organisms to assess putative ecological roles Using the GeoChip microarray, we detected fungal genes involved in the complete assimilation of nitrate and the degradation of lignin, as well as evidence for Partitiviridae (a mycovirus) that likely regulates fungal populations in the marine environment. These results demonstrate the potential for fungi to degrade terrigenously-sourced molecules, such as permafrost and compete with algae for nitrate during blooms. Ultimately, these data suggest that marine fungi could be as important in oceanic ecosystems as they are in freshwater environments.

2020-07-14 | GSE117831 | GEO

Responses to crowding stress in Atlantic salmon reared in different aquaculture systems

Project description:Recirculation systems (RAS), which reduce water consumption and improve pathogen control are increasingly used in Atlantic salmon aquaculture. Performance and adaptation of fish to new farming environment is actively investigated. Here, responses to crowding stress were compared in salmon reared in two systems (RAS with brackish water and flowthrough with full salinity water) at low and high density.

2021-04-27 | GSE173229 | GEO

marine sediment metagenome

Project description:Assessing the microbial diversity in Cape Comorin ocean sediment

| PRJNA295635 | ENA

marine sediment sample

Project description:resuscitation mechanisms during enrichment culture

| PRJNA431350 | ENA

marine sediment metagenome

Project description:Bacterial communities from marine sediment of salmon farms

| PRJNA642671 | ENA

Investigation of the host response of naïve Atlantic salmon (Salmo salar) inoculated with Paramoeba perurans prior to the onset of clinical symptoms

Project description:Amoebic Gill Disease (AGD), caused by the ectoparasite Paramoeba perurans (P. perurans) is characterised by hyperplasia of the gill epithelium and lamellar fusion and has become recognised as one of the most significant health threats in salmon farming . In this study, the gill and serum proteomes of Atlantic salmon inoculated with P. perurans, across multiple timepoints post-challenge, were analysed. The expression of proteins with established roles in innate immunity, across various timepoints, was compared with expression in naïve Atlantic salmon to elucidate the host response to gill colonisation.

2021-04-16 | PXD022101 | Pride

marine sediment metagenome

Project description:Black Sea sediment enrichment culture Metagenome

| PRJNA769205 | ENA

marine sediment metagenome

Project description:Ethane-degrading sulfate-reducing enrichment culture

| PRJNA495932 | ENA

Marine metagenome

Project description:Suspension-feeding benthic species physiological and microbiome response to salmon farming and associated environmental changes.

| PRJNA694725 | ENA

sediment metagenome

Project description:Development and validation of a multi-trophic metabarcoding biotic index for benthic organic enrichment biomonitoring using a salmon farm case-study.

| PRJNA417326 | ENA

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data