Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Archangium gephyra strain:DSM 2261

ABSTRACT: Archangium gephyra strain:DSM 2261 Genome sequencing and assembly

PROVIDER: PRJNA283574 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	GCA_001027285.1_sequence_report.txt	Txt

Items per page:

1 - 1 of 1

Similar Datasets

Archangium gephyra strain:DSM 2261

Project description:Archangium gephyra DSM 2261 genome sequencing

| PRJNA303575 | ENA

Archangium gephyra

Project description:Archangium gephyra overview

| PRJNA303926 | ENA

Archangium gephyra strain:KYC5002

Project description:Archangium gephyra strain:KYC5002 Genome sequencing

| PRJNA1028790 | ENA

Archangium gephyra strain:SDU49

Project description:Archangium gephyra strain:SDU49 Genome sequencing

| PRJNA866299 | ENA

Unravelling the Complete Genome of Archangium gephyra DSM 2261T and Evolutionary Insights into Myxobacterial Chitinases.

Project description:Family Cystobacteraceae is a group of eubacteria within order Myxococcales and class Deltaproteobacteria that includes more than 20 species belonging to 6 genera, that is, Angiococcus, Archangium, Cystobacter, Hyalangium, Melittangium, and Stigmatella. Earlier these members have been classified based on chitin degrading efficiency such as Cystobacter fuscus and Stigmatella aurantiaca, which are efficient chitin degraders, C. violaceus a partial chitin degrader and Archangium gephyra a chitin nondegrader. Here we report the 12.5 Mbp complete genome of A. gephyra DSM 2261T and compare it with four available genomes within the family Cystobacteraceae. Phylogeny and DNA-DNA hybridization studies reveal that A. gephyra is closest to Angiococcus disciformis, C. violaceus and C. ferrugineus, which are partial chitin degraders of the family Cystobacteraceae. Homology studies reveal the conservation of approximately half of the proteins in these genomes, with about 15% unique proteins in each genome. The total carbohydrate-active enzymes (CAZome) analysis reveals the presence of one GH18 chitinase in the A. gephyra genome whereas eight copies are present in C. fuscus and S. aurantiaca. Evolutionary studies of myxobacterial GH18 chitinases reveal that most of them are likely related to Terrabacteria and Proteobacteria whereas the Archangium GH18 homolog shares maximum similarity with those of chitin nondegrading Acidobacteria.

| S-EPMC5441343 | biostudies-literature

Archangium violaceum strain:SDU8

Project description:Archangium violaceum strain:SDU8 Genome sequencing

| PRJNA699684 | ENA

Archangium violaceum strain:SDU34

Project description:Archangium violaceum strain:SDU34 Genome sequencing

| PRJNA699039 | ENA

Archangium violaceum strain:scpoplar1

Project description:Archangium violaceum strain:scpoplar1 Genome sequencing

| PRJNA1144381 | ENA

Archangium lipolyticum strain:CY-1

Project description:Archangium lipolyticum strain:CY-1 Genome sequencing and assembly