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Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata

ABSTRACT: Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata

PROVIDER: PRJNA284487 | ENA |

REPOSITORIES: ENA

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			Action	DRS
	SRR2033950.fastq.gz	Fastqsanger.gz
	SRR2033951.fastq.gz	Fastqsanger.gz
	SRR2033952.fastq.gz	Fastqsanger.gz
	SRR2033953.fastq.gz	Fastqsanger.gz
	SRR2033954.fastq.gz	Fastqsanger.gz

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Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata

2015-08-01 | GSE69077 | GEO

Comparative transcriptome analysis in response to heat stress in Arabidopsis thaliana and Arabidopsis lyrata

Project description:Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. To identify heat stress induced genes, we performed RNA-sequencing of rosette leaves from mock-treated, heat-stressed and heat-stressed-recoved plants of both species. Analysis of genetic element transcriptional changes in response to 6 hours of 37°C heat stress and 48 hours of recovery in Arabidopsis thaliana Col-0 and Arabidopsis lyrata MN47.

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Project description:Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. In order to explore molecular basis of specific traits, we performed RNA-sequencing of vegetative rosettes from both species. Additionally, we sequenced apical meristems and inflorescences of A. lyrata that allow for intra-specific transcriptome comparison in several major developmental stages. Please view also related dataset GSE69077 (RNA-sequencing of heat stressed A. lyrata and A. thaliana plants).

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Project description:Arabidopsis thaliana and Arabidopsis lyrata are two closely related Brassicaceae species, which are used as models for plant comparative biology. They differ by lifestyle, predominant mating strategy, ecological niches and genome organization. In order to explore molecular basis of specific traits, we performed RNA-sequencing of vegetative rosettes from both species. Additionally, we sequenced apical meristems and inflorescences of A. lyrata that allow for intra-specific transcriptome comparison in several major developmental stages. Arabidopsis lyrata and Arabidopsis thaliana aerial tissues were collected from mock treated plants, total RNA isolated and poly-A RNA populations sequenced

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Comparative transcriptome profiling of Arabidopsis lyrata and Arabidopsis thaliana

Project description:Comparative transcriptome profiling of Arabidopsis lyrata and Arabidopsis thaliana

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Arabidopsis thaliana and Arabidopsis lyrata degradomes

Project description:Deep sequencing of the 5' ends of uncapped, polyA-enriched mRNA from two biological replicate samples from Arabidopsis thaliana inflorescences, as well as two biological replicates of Arabidopsis lyrata inflorescences. These data were used to experimentally identify sliced microRNA targets from the two species.

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Project description:Small RNA sequences from Arabidopsis lyrata leaves, as isolated from a single sample of rosette leaf tissue. These data were analyzed to 1) examine microRNA processing accuracy in A. lyrata and 2) to examine patterns of 24nt siRNA accumulation in A. lyrata.

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