Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Zymoseptoria tritici strain:IPO323 derivatives

ABSTRACT: Zymoseptoria tritici strain:IPO323 derivatives Epigenomics

PROVIDER: PRJNA286790 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2060840.fastq.gz	Fastqsanger.gz
	SRR2060841.fastq.gz	Fastqsanger.gz
	SRR2060836.fastq.gz	Fastqsanger.gz
	SRR2060838.fastq.gz	Fastqsanger.gz
	SRR2060839.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 12

Similar Datasets

Zymoseptoria tritici IPO323

Project description:Zymoseptoria tritici IPO323

| PRJNA296417 | ENA

Improved genome annotation of the fungal wheat pathogen Zymoseptoria tritici IPO323 using Iso-Seq and RNA-Seq data

Project description:To reannotate the genome of Zymoseptoria tritici IPO323, RNA-Seq and Iso-Seq runs were performed on different growth media to provide new source of evidence for gene model predictors. New gene models were predicted and combined with existing annotation releases. Finally, selection of best gene models was done by congruence with evidence data like transcript assembled from RNA-Seq, Iso-Seq cDNA and fungal proteins from databases.

2023-07-04 | GSE218898 | GEO

Zymoseptoria tritici IPO323

Project description:Zymoseptoria tritici IPO323 Raw sequence reads

| PRJNA1017776 | ENA

Zymoseptoria tritici IPO323

Project description:Zymoseptoria tritici IPO323 Raw sequence reads

| PRJNA933547 | ENA

Zymoseptoria tritici IPO323

Project description:Zymoseptoria tritici IPO323 Transcriptome or Gene expression

| PRJNA179083 | ENA

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

Project description:Septoria leaf blotch is a worldwide threat for wheat and mainly controlled by the application of synthetic fungicides. The fungal pathogen responsible for this disease, Zymoseptoria tritici, was shown as highly adaptable to its host plant, but also to fungicide challenge. Over the past decades it developed resistance to most fungicides due to target site modifications. Recently isolated strains showed cross-resistance to diverse fungicides and to unrelated drugs, suggesting a resistance mechanism that seems rarer in phytopathogenic fungi, known as multidrug resistance (MDR) in other organisms. In this study we show for two Z. tritici MDR strains, MDR6 and MDR7, enhanced prochloraz efflux sensitive to the modulators amitryptiline and chlorpromazine. Efflux was also inhibited by verapamil in the MDR7strain. Transcriptomics revealed several overexpressed transporter genes in both MDR strains, out of which the expression of the MgMFS1 transporter gene was the strongest and constitutively high in tested MDR field strains. Its inactivation in the MDR6 strain abolished resistance to fungicides with different modes of action revealing its involvement in the MDR phenomenon in Z. tritici. A total of four strains were compared, two sensitive (IPO323, S6) and two MDR strains (09-ASA-3apz; 09-CB01) with three replicates each. All strains were grown in liquid YPD medium to exponential growth.

2015-06-10 | E-GEOD-58672 | biostudies-arrayexpress

Deciphering defense mechanisms primed by a rhamnolipid in wheat towards Zymoseptoria tritici

Project description:We revealed that a rhamnolipid protects wheat against the hemibiotrophic fungal pathogen Zymoseptoria tritici. Foliar application of the biomolecule primes, during the early stages of infection, the expression of genes associated with different functional groups of genes.

2022-06-22 | GSE178704 | GEO

On-target antifungal activity and induction of an unusual metabolic defense mechanism by inhibitors of wheat pathogen Zymoseptoria tritici N-myristoyltransferase

Project description:Novel myristoylated proteins in a fungal pathogen of wheat Zymoseptoria tritici were identified.

2020-06-22 | PXD012857 | Pride

Next generation RNA sequencing to identify overexpressed transporter genes in Zymoseptoria tritici field strains

2015-06-10 | GSE58672 | GEO

Deciphering immune responses primed by a bacterial lipopeptide in wheat towards Zymoseptoria tritici

Project description:We revealed that mycosubtilin, a lipopeptide from Bacillus subtilis, protects wheat against the hemibiotrophic fungal pathogen Zymoseptoria tritici. Foliar application of the biomolecule primes, during the early stages of infection, the expression of genes associated with sixteen functional groups, including responses to pathogens, abiotic and oxidative stresses, secondary metabolism, cell-wall structure and function, and primary metabolic pathways (carbohydrate, amino acid, protein, lipid, and energy metabolisms).

2022-11-04 | GSE169298 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data