Browse
Submit Data
Databases
API
Help

Dataset Information

0 Views

0 Connections

0 Citations

0 Reanalyses

0 Downloads

Omics score: 0

Saccharomyces cerevisiae

ABSTRACT: Defining the Rio1 transcriptome in the yeast Saccharomyces cerevisiae

PROVIDER: PRJNA288160 | ENA |

REPOSITORIES: ENA

ACCESS DATA

Json Xml

Dataset's files

Source:

			Action	DRS
	SRR2078870_1.fastq.gz	Fastqsanger.gz
	SRR2078870_2.fastq.gz	Fastqsanger.gz
	SRR2078871_1.fastq.gz	Fastqsanger.gz
	SRR2078871_2.fastq.gz	Fastqsanger.gz
	SRR2078872.fastq.gz	Fastqsanger.gz

Items per page:

1 - 5 of 29

Similar Datasets

Genome-wide chromatin localization maps of the endogenously expressed AID-labelled kinase/ATPase Rio1 in Saccharomyces cerevisiae W303, as determined under unperturbed culture conditions (YPD medium, exponential growth, 23°C)

Project description:We report the the first single-molecule-based NGS analysis of chromatin regions that co-immunoprecipitate with Rio1 in the yeast Saccharomyces cerevisiae.

2018-06-14 | GSE70232 | GEO

Defining the Rio1 transcriptome in the yeast Saccharomyces cerevisiae

Project description:The conserved Saccharomyces cerevisiae kinase/ATPase Rio1 downregulates rDNA transcription to promote rDNA stability and segregation. To uncover additional roles in transcriptional regulation beyond the rDNA locus we defined the global Rio1 transcriptiome. By NGS we identify 818 differentially expressed genes that are under the transcriptional control of Rio1.

2018-06-14 | GSE70286 | GEO

The global map of Rio1 activity in Saccharomyces cerevisiae

Project description:In Saccharomyces cerevisiae, the kinase Rio1 regulates rDNA transcription and segregation, pre-rRNA cleavage, and 40S ribosomal subunit maturation. Other roles are unknown. Human orthologue RIOK1; which is frequently overexpressed in malignancies, drives tumor growth and metastasis. Again, also RIOK1 biology is poorly understood. In this study, we charted the global activity of Rio1 in budding yeast. By producing and systems-integrating its protein-interaction, gene-transcription, and chromatin-binding maps we generated Rio1's multi-layered activity network, which controls protein synthesis and turnover, metabolism, growth, proliferation, and genetic stability. Rio1 regulates itself at the transcriptional level, and manages its network both directly and indirectly, via a battery of regulators and transcription factors, including Gcn4. We experimentally confirmed the network and show that Rio1 commands its downstream circuit depending on the growth conditions encountered. We also find that Rio1 and RIOK1 activities are functionally equivalent. Our data suggest that pathological RIOK1 expression may deregulate its network and fuel promiscuous transcription and ribosome production, uncontrolled metabolism, growth, proliferation, and chromosomal instability; well-known contributors to cancer initiation, maintenance and metastasis.

2020-11-23 | GSE107318 | GEO

Saccharomyces cerevisiae & stress

Project description:Next-generation proteomics of Saccharomyces cerevisiae for defining the response of this yeast to lanthanides.

2022-04-23 | PXD010700 | Pride

Transcriptional response of Saccharomyces cerevisiae to potassium starvation

Project description:In this study we investigated the transcriptional response of the yeast Saccharomyces cerevisiae to potassium starvation. To this end yeast cells were grown for 60 min in media without potassium or in media with a standard potassium concnetration (50 mM KCl). Using Serial Analysis of Gene Expression (SAGE)-tag sequencing the effect of potassium starvation on the transcriptome was determined.

2014-12-11 | GSE57093 | GEO

Effect of the antifungal protein PeAfpA in the expression profile of Saccharomyces cerevisiae BY4741 strain.

Project description:Transcriptomic study to characterize the interaction of the Penicillium expansum antifungal protein PeAfpA with the the model yeast Saccharomyces cerevisiae. For this, the transcriptome of S. cerevisiae BY4741 strain was compared among samples treated with increasing concentrations of PeAfpA.

2023-11-09 | GSE233704 | GEO

RNA-seq Experiments from Saccharomyces cerevisiae

Project description:RNA-seq Experiments from Calorie Restricted and Non-Restricted WT Yeast We used RNA-seq to study transcriptome changes under Calorie Restricted and Non-restricted Saccharomyces cerevisiae

2014-09-15 | E-GEOD-53720 | biostudies-arrayexpress

Expression data from Saccharomyces cerevisiae and Saccharomyces pastorianus var. carlsbergensis

Project description:During fermentation Saccharomyces yeast produces various aroma-active metabolites determining the different characteristics of aroma and taste in fermented beverages. Amino acid utilization by yeast during brewer´s wort fermentation is seen as linked to flavour profile. To better understand the relationship between the biosynthesis of aroma relevant metabolites and the importance of amino acids, DNA microarrays were performed for Saccharomyces cerevisiae strain S81 and Saccharomyces pastorianus var. carlsbergensis strain S23, respectively. Thereby, changes in transcription of genes were measured, which are associated with amino acid assimilation and its derived aroma-active compounds during fermentation.

2013-09-11 | GSE50728 | GEO

Proteomics of Saccharomyces cerevisiae mutants subjected to lanthanide stress

Project description:Next-generation proteomics of Saccharomyces cerevisiae mutants for defining their response to lanthanides.

2022-08-12 | PXD025030 | Pride

Expression data from Saccharomyces cerevisiae

Project description:Saccharomyces cerevisiae is an excellent microorganism for industrial succinic acid production, but high succinic acid concentration will inhibit the growth of Saccharomyces cerevisiae then reduce the production of succinic acid. Through analysis the transcriptomic data of Saccharomyces cerevisiae with different genetic backgrounds under different succinic acid stress, we hope to find the response mechanism of Saccharomyces cerevisiae to succinic acid.

2022-01-09 | GSE193190 | GEO

OmicsDI is part of the ELIXIR infrastructure

OmicsDI is an Elixir interoperability service. Learn more ›

Tweets

OmicsDI Databases

PRIDE
PeptideAtlas
MassIVE
JPOST Repository
Physiome Model Repository

EGA
EVA
ENA
LINCS
PAXDB
Cell Collective

MetaboLights
Metabolomics Workbench
MetabolomeExpress
GNPS
BioModels
FAIRDOMHub

ArrayExpress
dbGaP
ExpressionAtlas
GEO
NODE

Information

Databases
Help
API
Contact us
Code on GitHub
Terms of use
Submit Data